miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 3' -56.9 NC_001875.2 + 89159 0.7 0.611255
Target:  5'- -cGCCGCGCGGUU-UCGUGcacGCUGGCGc -3'
miRNA:   3'- uuUGGCGUGUCAGcGGCAC---UGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 17820 0.7 0.611255
Target:  5'- uGGACCGCGCGGcCGCCaUGcGCgagGGCGc -3'
miRNA:   3'- -UUUGGCGUGUCaGCGGcAC-UGa--CCGU- -5'
7019 3' -56.9 NC_001875.2 + 58071 0.71 0.51927
Target:  5'- uGACCGCGCuGUCGgCG-GuCUGGCGc -3'
miRNA:   3'- uUUGGCGUGuCAGCgGCaCuGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 69260 0.67 0.783104
Target:  5'- uGGGCCGCgGCucgaGCCGUGGCggcGGCAa -3'
miRNA:   3'- -UUUGGCG-UGucagCGGCACUGa--CCGU- -5'
7019 3' -56.9 NC_001875.2 + 36153 0.68 0.708485
Target:  5'- cGAGCCGUAgauugcgcauuaaacCGGUUGCCGUGugUGaCAa -3'
miRNA:   3'- -UUUGGCGU---------------GUCAGCGGCACugACcGU- -5'
7019 3' -56.9 NC_001875.2 + 130778 0.68 0.704413
Target:  5'- uGACCGCGCGGUCGCCaacguUGcgcccaacGCUGuGCGc -3'
miRNA:   3'- uUUGGCGUGUCAGCGGc----AC--------UGAC-CGU- -5'
7019 3' -56.9 NC_001875.2 + 70040 0.66 0.828051
Target:  5'- uGAUUGUGCGGUCGCUGcGACggacgGGCc -3'
miRNA:   3'- uUUGGCGUGUCAGCGGCaCUGa----CCGu -5'
7019 3' -56.9 NC_001875.2 + 90131 0.66 0.799748
Target:  5'- -cGCCGCGCAG-CGCCGcgcauacgccCUGGCc -3'
miRNA:   3'- uuUGGCGUGUCaGCGGCacu-------GACCGu -5'
7019 3' -56.9 NC_001875.2 + 120421 0.67 0.754383
Target:  5'- gGAAgUGCGCAGUCGCac-GGCggGGCAa -3'
miRNA:   3'- -UUUgGCGUGUCAGCGgcaCUGa-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 17164 0.68 0.683916
Target:  5'- cGAAaaGCACGGUCGCCGcUGAC--GCAc -3'
miRNA:   3'- -UUUggCGUGUCAGCGGC-ACUGacCGU- -5'
7019 3' -56.9 NC_001875.2 + 122099 0.69 0.652862
Target:  5'- -cAUCGCguacaacgACAGUCGCCG--GCUGGCGu -3'
miRNA:   3'- uuUGGCG--------UGUCAGCGGCacUGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 117762 0.66 0.828051
Target:  5'- uGGGCUGCACGguaaacccGUCGCCGU---UGGCGa -3'
miRNA:   3'- -UUUGGCGUGU--------CAGCGGCAcugACCGU- -5'
7019 3' -56.9 NC_001875.2 + 98878 0.69 0.673597
Target:  5'- uAAugUGCGCGGgCGCCGUuucgggaaucGAUUGGCGc -3'
miRNA:   3'- -UUugGCGUGUCaGCGGCA----------CUGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 33396 0.67 0.783104
Target:  5'- -cAUUGCGCGGUagCGCuCGUGGCUGaGCu -3'
miRNA:   3'- uuUGGCGUGUCA--GCG-GCACUGAC-CGu -5'
7019 3' -56.9 NC_001875.2 + 83453 0.7 0.611255
Target:  5'- cGAGCCgGCACcuGUCGCCGcgucgGACgGGCGc -3'
miRNA:   3'- -UUUGG-CGUGu-CAGCGGCa----CUGaCCGU- -5'
7019 3' -56.9 NC_001875.2 + 29276 0.66 0.828051
Target:  5'- cGACCGCgccgGCGGggCGCgGUcGugUGGCGu -3'
miRNA:   3'- uUUGGCG----UGUCa-GCGgCA-CugACCGU- -5'
7019 3' -56.9 NC_001875.2 + 10396 0.66 0.819396
Target:  5'- -cGCCGC-Cg--CGCCGUGGCgcGGCAc -3'
miRNA:   3'- uuUGGCGuGucaGCGGCACUGa-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 74091 0.66 0.819396
Target:  5'- aAAACC-UGCAGUugggcagcgaCGCCGUG-CUGGCGc -3'
miRNA:   3'- -UUUGGcGUGUCA----------GCGGCACuGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 122675 0.66 0.79241
Target:  5'- aAGACCGCAgCAaaaaguuggcGUgCGCCGUGgacaccgaACUGGCGc -3'
miRNA:   3'- -UUUGGCGU-GU----------CA-GCGGCAC--------UGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 26536 0.69 0.673597
Target:  5'- uGAGCUgGCGCuugAGUCGgCGUG-CUGGCAg -3'
miRNA:   3'- -UUUGG-CGUG---UCAGCgGCACuGACCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.