miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 3' -52.6 NC_001875.2 + 100583 0.66 0.96173
Target:  5'- cUGCGuCGACGCGuACGcGGGCCGGg- -3'
miRNA:   3'- aAUGUcGCUGUGU-UGUaCUCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 124246 0.66 0.953517
Target:  5'- -gGCGGCGGCACA--AUGAcgacaggcggcgcGuuGGUCg -3'
miRNA:   3'- aaUGUCGCUGUGUugUACU-------------CggCCAG- -5'
7020 3' -52.6 NC_001875.2 + 1050 0.66 0.944662
Target:  5'- -cACAGCGuuggGCGCAACGUuGGCgaccgcgCGGUCa -3'
miRNA:   3'- aaUGUCGC----UGUGUUGUAcUCG-------GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 57931 0.66 0.96173
Target:  5'- ---gAGCGACGCAAUGUGucGCgaaacgCGGUCg -3'
miRNA:   3'- aaugUCGCUGUGUUGUACu-CG------GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 128010 0.66 0.953933
Target:  5'- cUGCGGCcGCGcCGGCGUGcgccgacgacGGCCGGUg -3'
miRNA:   3'- aAUGUCGcUGU-GUUGUAC----------UCGGCCAg -5'
7020 3' -52.6 NC_001875.2 + 120740 0.66 0.949659
Target:  5'- -aGCuGCGGCGCcgaGACG-GGGCCGuGUCc -3'
miRNA:   3'- aaUGuCGCUGUG---UUGUaCUCGGC-CAG- -5'
7020 3' -52.6 NC_001875.2 + 39644 0.66 0.96173
Target:  5'- -cGCAGCGaaccgcGCGCGAguuUGGGCCGG-Cg -3'
miRNA:   3'- aaUGUCGC------UGUGUUgu-ACUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 17693 0.66 0.957955
Target:  5'- -cGCGGCuGCgACAGCAUGAGCUGc-- -3'
miRNA:   3'- aaUGUCGcUG-UGUUGUACUCGGCcag -5'
7020 3' -52.6 NC_001875.2 + 36611 0.66 0.959494
Target:  5'- --uUAGCGcucacguaaauaagaGCGCAACAUGGcuacGCCGGUg -3'
miRNA:   3'- aauGUCGC---------------UGUGUUGUACU----CGGCCAg -5'
7020 3' -52.6 NC_001875.2 + 94472 0.66 0.949218
Target:  5'- cUGCAGCGGCGCGcgcguucGCAcGAGCgcgCGGcCg -3'
miRNA:   3'- aAUGUCGCUGUGU-------UGUaCUCG---GCCaG- -5'
7020 3' -52.6 NC_001875.2 + 3165 0.66 0.96173
Target:  5'- ---gGGCGGCGaguAgGUGAGCCGG-Cg -3'
miRNA:   3'- aaugUCGCUGUgu-UgUACUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 89810 0.67 0.918554
Target:  5'- -cGCgGGCGGCAgAuCGUGGuGCCGGUUa -3'
miRNA:   3'- aaUG-UCGCUGUgUuGUACU-CGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 81009 0.67 0.924397
Target:  5'- -gGCGcGCGACGCGuuGCu---GCCGGUCu -3'
miRNA:   3'- aaUGU-CGCUGUGU--UGuacuCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 31981 0.67 0.924397
Target:  5'- -aACAGCGuCGCGuugAUGAGgCCGGUg -3'
miRNA:   3'- aaUGUCGCuGUGUug-UACUC-GGCCAg -5'
7020 3' -52.6 NC_001875.2 + 107843 0.67 0.924397
Target:  5'- gUGCGccuuGCGACGC-GCGcGAGuuGGUCg -3'
miRNA:   3'- aAUGU----CGCUGUGuUGUaCUCggCCAG- -5'
7020 3' -52.6 NC_001875.2 + 32396 0.67 0.924397
Target:  5'- -gGCGGCGACGCAAaaguuGUGGGCgaCGG-Cg -3'
miRNA:   3'- aaUGUCGCUGUGUUg----UACUCG--GCCaG- -5'
7020 3' -52.6 NC_001875.2 + 74648 0.67 0.918554
Target:  5'- -gGCAGCGugcCAUGGCcgGGGCUGGg- -3'
miRNA:   3'- aaUGUCGCu--GUGUUGuaCUCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 33919 0.67 0.918554
Target:  5'- gUGCAGCGACACGugAgguggcccagcuUGcGCCGcGUUu -3'
miRNA:   3'- aAUGUCGCUGUGUugU------------ACuCGGC-CAG- -5'
7020 3' -52.6 NC_001875.2 + 59585 0.67 0.924397
Target:  5'- cUGCAGCGugGcCGACGUgcgcGAGCaCGGg- -3'
miRNA:   3'- aAUGUCGCugU-GUUGUA----CUCG-GCCag -5'
7020 3' -52.6 NC_001875.2 + 130064 0.67 0.918554
Target:  5'- -gGCGGCGGCgGCGGCAUGcuCgUGGUCa -3'
miRNA:   3'- aaUGUCGCUG-UGUUGUACucG-GCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.