Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 39644 | 0.66 | 0.96173 |
Target: 5'- -cGCAGCGaaccgcGCGCGAguuUGGGCCGG-Cg -3' miRNA: 3'- aaUGUCGC------UGUGUUgu-ACUCGGCCaG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 74648 | 0.67 | 0.918554 |
Target: 5'- -gGCAGCGugcCAUGGCcgGGGCUGGg- -3' miRNA: 3'- aaUGUCGCu--GUGUUGuaCUCGGCCag -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 32396 | 0.67 | 0.924397 |
Target: 5'- -gGCGGCGACGCAAaaguuGUGGGCgaCGG-Cg -3' miRNA: 3'- aaUGUCGCUGUGUUg----UACUCG--GCCaG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 107843 | 0.67 | 0.924397 |
Target: 5'- gUGCGccuuGCGACGC-GCGcGAGuuGGUCg -3' miRNA: 3'- aAUGU----CGCUGUGuUGUaCUCggCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 12294 | 0.67 | 0.94034 |
Target: 5'- gUGCAGcCGGCACGccgcCGUGuGCgUGGUCa -3' miRNA: 3'- aAUGUC-GCUGUGUu---GUACuCG-GCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 90728 | 0.67 | 0.94034 |
Target: 5'- -aGC-GCGACACGACGUGcGaCGGUg -3' miRNA: 3'- aaUGuCGCUGUGUUGUACuCgGCCAg -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 111824 | 0.67 | 0.94034 |
Target: 5'- cUGCuccGCGugACGGCugcgcGAGCCGGcCa -3' miRNA: 3'- aAUGu--CGCugUGUUGua---CUCGGCCaG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 1050 | 0.66 | 0.944662 |
Target: 5'- -cACAGCGuuggGCGCAACGUuGGCgaccgcgCGGUCa -3' miRNA: 3'- aaUGUCGC----UGUGUUGUAcUCG-------GCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 124246 | 0.66 | 0.953517 |
Target: 5'- -gGCGGCGGCACA--AUGAcgacaggcggcgcGuuGGUCg -3' miRNA: 3'- aaUGUCGCUGUGUugUACU-------------CggCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 33919 | 0.67 | 0.918554 |
Target: 5'- gUGCAGCGACACGugAgguggcccagcuUGcGCCGcGUUu -3' miRNA: 3'- aAUGUCGCUGUGUugU------------ACuCGGC-CAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 94626 | 0.68 | 0.892569 |
Target: 5'- -aGCGGCGGCACAACGUGAuaCa--- -3' miRNA: 3'- aaUGUCGCUGUGUUGUACUcgGccag -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 34934 | 0.69 | 0.878049 |
Target: 5'- gUGCGGCGugACAACAacccgGAGCUGu-- -3' miRNA: 3'- aAUGUCGCugUGUUGUa----CUCGGCcag -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 86597 | 0.74 | 0.59379 |
Target: 5'- -aGCAGCGGCAUgccgAACAUGGGCCGc-- -3' miRNA: 3'- aaUGUCGCUGUG----UUGUACUCGGCcag -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 126320 | 0.73 | 0.679671 |
Target: 5'- -aACGGCGGCcgGCGuaaacugcgcGCGUGcGCCGGUCg -3' miRNA: 3'- aaUGUCGCUG--UGU----------UGUACuCGGCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 114105 | 0.72 | 0.732249 |
Target: 5'- -aACGGCGuuugGCugGACAcGAcGCCGGUCu -3' miRNA: 3'- aaUGUCGC----UGugUUGUaCU-CGGCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 8852 | 0.71 | 0.752683 |
Target: 5'- --uCAGCuGGCGC-ACGUGuuGCCGGUCa -3' miRNA: 3'- aauGUCG-CUGUGuUGUACu-CGGCCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 42743 | 0.7 | 0.819954 |
Target: 5'- -cGCGGCGACgcGCAugGUGAGCggcgcgcucgGGUCg -3' miRNA: 3'- aaUGUCGCUG--UGUugUACUCGg---------CCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 128949 | 0.69 | 0.837624 |
Target: 5'- -cACgAGCGGCuaaGGCGUGAGCUGGg- -3' miRNA: 3'- aaUG-UCGCUGug-UUGUACUCGGCCag -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 42213 | 0.69 | 0.854468 |
Target: 5'- -cGCGGCGGCACG-CGUGGuGCUuGUCa -3' miRNA: 3'- aaUGUCGCUGUGUuGUACU-CGGcCAG- -5' |
|||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 49639 | 0.69 | 0.854468 |
Target: 5'- -aGCGGCGACACgAGCGgccGCCGG-Cg -3' miRNA: 3'- aaUGUCGCUGUG-UUGUacuCGGCCaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home