Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7020 | 3' | -52.6 | NC_001875.2 | + | 128589 | 1.07 | 0.00604 |
Target: 5'- gUUACAGCGACACAACAUGAGCCGGUCc -3' miRNA: 3'- -AAUGUCGCUGUGUUGUACUCGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 91181 | 0.74 | 0.572453 |
Target: 5'- -cACAGCGGCGCuuGCGUGuuGuuGGUCg -3' miRNA: 3'- aaUGUCGCUGUGu-UGUACu-CggCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 86597 | 0.74 | 0.59379 |
Target: 5'- -aGCAGCGGCAUgccgAACAUGGGCCGc-- -3' miRNA: 3'- aaUGUCGCUGUG----UUGUACUCGGCcag -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 73704 | 0.73 | 0.658265 |
Target: 5'- cUGCGGCGGCuGCGGCuguugGGGuuGGUCg -3' miRNA: 3'- aAUGUCGCUG-UGUUGua---CUCggCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 126320 | 0.73 | 0.679671 |
Target: 5'- -aACGGCGGCcgGCGuaaacugcgcGCGUGcGCCGGUCg -3' miRNA: 3'- aaUGUCGCUG--UGU----------UGUACuCGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 93116 | 0.72 | 0.720841 |
Target: 5'- -cAguGCGGCucCAGCAUGAugaugugguugccGCCGGUCa -3' miRNA: 3'- aaUguCGCUGu-GUUGUACU-------------CGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 114105 | 0.72 | 0.732249 |
Target: 5'- -aACGGCGuuugGCugGACAcGAcGCCGGUCu -3' miRNA: 3'- aaUGUCGC----UGugUUGUaCU-CGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 41464 | 0.71 | 0.739449 |
Target: 5'- gUUGCGGCGcGCGCGGCGugucuuguguggucUGcgccGGCCGGUCg -3' miRNA: 3'- -AAUGUCGC-UGUGUUGU--------------AC----UCGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 33277 | 0.71 | 0.74252 |
Target: 5'- -gACGGCGGCAgCAGCGcguucuUGAGCaCGGUg -3' miRNA: 3'- aaUGUCGCUGU-GUUGU------ACUCG-GCCAg -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 8852 | 0.71 | 0.752683 |
Target: 5'- --uCAGCuGGCGC-ACGUGuuGCCGGUCa -3' miRNA: 3'- aauGUCG-CUGUGuUGUACu-CGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 94760 | 0.71 | 0.759729 |
Target: 5'- -cGCGGCGgugucguccgccaaACACAGCGUG-GCCGcGUCc -3' miRNA: 3'- aaUGUCGC--------------UGUGUUGUACuCGGC-CAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 124748 | 0.7 | 0.792058 |
Target: 5'- -gGCAGCGcGCGCuGCAUGucugcgcacaGGCCGGUg -3' miRNA: 3'- aaUGUCGC-UGUGuUGUAC----------UCGGCCAg -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 91351 | 0.7 | 0.809909 |
Target: 5'- gUACAGCGugccguuGCGCGACAUGAcGcCCGG-Ca -3' miRNA: 3'- aAUGUCGC-------UGUGUUGUACU-C-GGCCaG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 42743 | 0.7 | 0.819954 |
Target: 5'- -cGCGGCGACgcGCAugGUGAGCggcgcgcucgGGUCg -3' miRNA: 3'- aaUGUCGCUG--UGUugUACUCGg---------CCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 128949 | 0.69 | 0.837624 |
Target: 5'- -cACgAGCGGCuaaGGCGUGAGCUGGg- -3' miRNA: 3'- aaUG-UCGCUGug-UUGUACUCGGCCag -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 49639 | 0.69 | 0.854468 |
Target: 5'- -aGCGGCGACACgAGCGgccGCCGG-Cg -3' miRNA: 3'- aaUGUCGCUGUG-UUGUacuCGGCCaG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 42213 | 0.69 | 0.854468 |
Target: 5'- -cGCGGCGGCACG-CGUGGuGCUuGUCa -3' miRNA: 3'- aaUGUCGCUGUGUuGUACU-CGGcCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 129554 | 0.69 | 0.868089 |
Target: 5'- -cACGGCgGGC-CGGCGUuuuguaauuguaucGAGCCGGUCc -3' miRNA: 3'- aaUGUCG-CUGuGUUGUA--------------CUCGGCCAG- -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 34934 | 0.69 | 0.878049 |
Target: 5'- gUGCGGCGugACAACAacccgGAGCUGu-- -3' miRNA: 3'- aAUGUCGCugUGUUGUa----CUCGGCcag -5' |
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7020 | 3' | -52.6 | NC_001875.2 | + | 63022 | 0.68 | 0.885433 |
Target: 5'- -gGCAGCGcaaAUACAGCGUGGGauGGUg -3' miRNA: 3'- aaUGUCGC---UGUGUUGUACUCggCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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