miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 131513 0.66 0.7763
Target:  5'- cGGcGCGCGGUGCaGCGGCuGgaagCGGcGCa -3'
miRNA:   3'- aCU-CGUGCCACG-CGCUGuCa---GUC-CGg -5'
7022 3' -58.1 NC_001875.2 + 129426 1.12 0.00092
Target:  5'- aUGAGCACGGUGCGCGACAGUCAGGCCa -3'
miRNA:   3'- -ACUCGUGCCACGCGCUGUCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 128038 0.66 0.766961
Target:  5'- -cGGC-CGGUG-GuCGACgcugAGUCGGGCCc -3'
miRNA:   3'- acUCGuGCCACgC-GCUG----UCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 127245 0.72 0.46983
Target:  5'- uUGAGCGCGGccucuucGUGCG-CAuGUCGGGCa -3'
miRNA:   3'- -ACUCGUGCCa------CGCGCuGU-CAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 127132 0.7 0.557003
Target:  5'- gGAGCGCGuGUGgaacccCGCGGCGGgcaucgaCGGGCUa -3'
miRNA:   3'- aCUCGUGC-CAC------GCGCUGUCa------GUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 126556 0.71 0.502031
Target:  5'- cGGGCGCGGgcacgucggccaucGCGUGGCAGUUuuGGCa -3'
miRNA:   3'- aCUCGUGCCa-------------CGCGCUGUCAGu-CCGg -5'
7022 3' -58.1 NC_001875.2 + 125470 0.66 0.766961
Target:  5'- --cGCGCGGUGCcCGACGacgacaUCGuGGCCg -3'
miRNA:   3'- acuCGUGCCACGcGCUGUc-----AGU-CCGG- -5'
7022 3' -58.1 NC_001875.2 + 124720 0.67 0.747932
Target:  5'- -uGGCaaGCGGcGCGUGGCGGUCAaugucGGCa -3'
miRNA:   3'- acUCG--UGCCaCGCGCUGUCAGU-----CCGg -5'
7022 3' -58.1 NC_001875.2 + 119899 0.69 0.607463
Target:  5'- --cGC-CGGUcGCGCGcACAGUCGGcgcGCCg -3'
miRNA:   3'- acuCGuGCCA-CGCGC-UGUCAGUC---CGG- -5'
7022 3' -58.1 NC_001875.2 + 117338 0.67 0.718658
Target:  5'- -cGGCGCGGcGCggGCGAacCGG-CGGGCCg -3'
miRNA:   3'- acUCGUGCCaCG--CGCU--GUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 114503 0.67 0.747932
Target:  5'- cUGA-CGCGGUcGCGCGGCGGcgCAaccGCCa -3'
miRNA:   3'- -ACUcGUGCCA-CGCGCUGUCa-GUc--CGG- -5'
7022 3' -58.1 NC_001875.2 + 113595 0.66 0.785513
Target:  5'- -cAGCACGGcGUucgaGuCGGCGG-CGGGCCg -3'
miRNA:   3'- acUCGUGCCaCG----C-GCUGUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 113564 0.67 0.717669
Target:  5'- -cGGCGCGGUcGCGC-ACGGcgcgccaUUGGGCCa -3'
miRNA:   3'- acUCGUGCCA-CGCGcUGUC-------AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 113324 0.71 0.517517
Target:  5'- -cAGCAUGGUgggcuuuucGUGCGGCgGGUCGGGCg -3'
miRNA:   3'- acUCGUGCCA---------CGCGCUG-UCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 109098 0.68 0.658367
Target:  5'- aUGuGCuggaGCGGUGCGUGGCcGgcgcacaagUAGGCCa -3'
miRNA:   3'- -ACuCG----UGCCACGCGCUGuCa--------GUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 108833 0.67 0.738263
Target:  5'- cUGAaCACGGUGCGCGcccaaaacgcGCAGaUCuuGGCg -3'
miRNA:   3'- -ACUcGUGCCACGCGC----------UGUC-AGu-CCGg -5'
7022 3' -58.1 NC_001875.2 + 103333 0.7 0.587176
Target:  5'- cGuGUACGGUGUGaCG-CuGUCGGGCg -3'
miRNA:   3'- aCuCGUGCCACGC-GCuGuCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 103328 0.72 0.460561
Target:  5'- cGGGCgACGcGUGCGCGACGGcUAG-CCa -3'
miRNA:   3'- aCUCG-UGC-CACGCGCUGUCaGUCcGG- -5'
7022 3' -58.1 NC_001875.2 + 99909 0.66 0.793687
Target:  5'- cGAGCgcaacgaGCGGgccGCGCGcGCGGUgCAgcgcGGCCa -3'
miRNA:   3'- aCUCG-------UGCCa--CGCGC-UGUCA-GU----CCGG- -5'
7022 3' -58.1 NC_001875.2 + 98276 0.71 0.527291
Target:  5'- cGGGCAUGGUGCcccGCGGCGaccgcacUguGGCCa -3'
miRNA:   3'- aCUCGUGCCACG---CGCUGUc------AguCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.