Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7023 | 5' | -46.1 | NC_001875.2 | + | 109188 | 0.66 | 0.999779 |
Target: 5'- ----cAGCgaacGCGCGCCUUUUAuaccAGCa -3' miRNA: 3'- uuuuaUCG----UGCGCGGAAAGUuu--UCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 93751 | 0.66 | 0.999722 |
Target: 5'- ----gAGCAUGCGCCacacacccacguugUCGAAcgGGCGg -3' miRNA: 3'- uuuuaUCGUGCGCGGaa------------AGUUU--UCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 121371 | 0.66 | 0.999779 |
Target: 5'- ----cAGCAaGCGCCaUUCAcuGAGCGc -3' miRNA: 3'- uuuuaUCGUgCGCGGaAAGUu-UUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 77829 | 0.66 | 0.999779 |
Target: 5'- -cGGUAcGCGCGCGCCg--CAAGGccguGCGc -3' miRNA: 3'- uuUUAU-CGUGCGCGGaaaGUUUU----CGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 126833 | 0.66 | 0.999715 |
Target: 5'- ----aAGCGCGCGCCgggCAuaguAAGUu -3' miRNA: 3'- uuuuaUCGUGCGCGGaaaGUu---UUCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 77261 | 0.66 | 0.999715 |
Target: 5'- ----gGGCGCGcCGCCgggC-GAAGCGg -3' miRNA: 3'- uuuuaUCGUGC-GCGGaaaGuUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 66929 | 0.66 | 0.999779 |
Target: 5'- ----gGGCAUGCGCa--UCAacGAGGCGc -3' miRNA: 3'- uuuuaUCGUGCGCGgaaAGU--UUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 86927 | 0.66 | 0.999715 |
Target: 5'- ----aAGCGC-CGCCUagagugCGAGGGCGa -3' miRNA: 3'- uuuuaUCGUGcGCGGAaa----GUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 114937 | 0.66 | 0.999715 |
Target: 5'- ----aGGCcCGCGCCgucgUCGAuGGGCGu -3' miRNA: 3'- uuuuaUCGuGCGCGGaa--AGUU-UUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 75037 | 0.66 | 0.99987 |
Target: 5'- uGAAcgAGUACGCGCUgucgUCAuu-GCa -3' miRNA: 3'- -UUUuaUCGUGCGCGGaa--AGUuuuCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 47323 | 0.66 | 0.99987 |
Target: 5'- aAAGAUGacGCACGUGCUg-UCGGcGGCGg -3' miRNA: 3'- -UUUUAU--CGUGCGCGGaaAGUUuUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 61897 | 0.66 | 0.999715 |
Target: 5'- --cGUGGCccgacACGCGCCgugUCAc-GGCGg -3' miRNA: 3'- uuuUAUCG-----UGCGCGGaa-AGUuuUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 115946 | 0.66 | 0.999715 |
Target: 5'- cAAAGUAGCGCGgGUCUUcggCAAu-GCa -3' miRNA: 3'- -UUUUAUCGUGCgCGGAAa--GUUuuCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 33045 | 0.66 | 0.99983 |
Target: 5'- ----gGGCGcCGCGCCgcgCGGAuAGCGu -3' miRNA: 3'- uuuuaUCGU-GCGCGGaaaGUUU-UCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 31871 | 0.66 | 0.99987 |
Target: 5'- --cGUGGaCugGCGCCgguugCAAGuuGGCGa -3' miRNA: 3'- uuuUAUC-GugCGCGGaaa--GUUU--UCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 89480 | 0.66 | 0.99983 |
Target: 5'- aAAAGUGGCGCccucGCGCCg--CAAccGCu -3' miRNA: 3'- -UUUUAUCGUG----CGCGGaaaGUUuuCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 27195 | 0.66 | 0.99987 |
Target: 5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3' miRNA: 3'- uUUUAUCGUGCGCGGaa--AGUUu------UCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 4279 | 0.67 | 0.999089 |
Target: 5'- aAAAGUgcAGCAgCGCGCCgaUCAAGcacGCGg -3' miRNA: 3'- -UUUUA--UCGU-GCGCGGaaAGUUUu--CGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 9639 | 0.67 | 0.999525 |
Target: 5'- -----uGCGCGCGCCgugcgugUUUCGcGAGCu -3' miRNA: 3'- uuuuauCGUGCGCGG-------AAAGUuUUCGc -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 102731 | 0.67 | 0.999626 |
Target: 5'- uGGAUAGCgaccuuaaagucuGCGCgGCCUUUgCAcGAGCGc -3' miRNA: 3'- uUUUAUCG-------------UGCG-CGGAAA-GUuUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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