miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7023 5' -46.1 NC_001875.2 + 1914 0.69 0.997038
Target:  5'- cGGGUGcGCACGCGCUUgaaAGGAGUGu -3'
miRNA:   3'- uUUUAU-CGUGCGCGGAaagUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 4279 0.67 0.999089
Target:  5'- aAAAGUgcAGCAgCGCGCCgaUCAAGcacGCGg -3'
miRNA:   3'- -UUUUA--UCGU-GCGCGGaaAGUUUu--CGC- -5'
7023 5' -46.1 NC_001875.2 + 5020 0.68 0.998617
Target:  5'- ----cGGCGCGCGCUUUgUCAGAuucagucuGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGGAA-AGUUUu-------CGC- -5'
7023 5' -46.1 NC_001875.2 + 6196 0.67 0.999536
Target:  5'- ------cCGCGCGCCgUUUCAAAGcGCGc -3'
miRNA:   3'- uuuuaucGUGCGCGG-AAAGUUUU-CGC- -5'
7023 5' -46.1 NC_001875.2 + 9639 0.67 0.999525
Target:  5'- -----uGCGCGCGCCgugcgugUUUCGcGAGCu -3'
miRNA:   3'- uuuuauCGUGCGCGG-------AAAGUuUUCGc -5'
7023 5' -46.1 NC_001875.2 + 11561 0.7 0.994192
Target:  5'- -----cGUACGCGCCg--CcGAAGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGGaaaGuUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 15085 0.67 0.999267
Target:  5'- -----cGCGCaGCGCCUgguuGAGGCGg -3'
miRNA:   3'- uuuuauCGUG-CGCGGAaaguUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 17064 0.91 0.206388
Target:  5'- aAAAAUAGCACGCG-CUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCgGAAAGUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 17129 0.85 0.460934
Target:  5'- aAAAAUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGcGCGGaAAGUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 17195 0.76 0.862777
Target:  5'- aAAAAUAGCACaCGCCgUUCGcGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGcGCGGaAAGUuUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 20647 0.67 0.999536
Target:  5'- aAAAAcGGCGCGCGCCg--Ccc-AGCGc -3'
miRNA:   3'- -UUUUaUCGUGCGCGGaaaGuuuUCGC- -5'
7023 5' -46.1 NC_001875.2 + 26785 0.71 0.98427
Target:  5'- ----gAGCgACGCGCCg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGGaaAGUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 27195 0.66 0.99987
Target:  5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3'
miRNA:   3'- uUUUAUCGUGCGCGGaa--AGUUu------UCGC- -5'
7023 5' -46.1 NC_001875.2 + 28029 0.71 0.986181
Target:  5'- ----cAGCACGCGCCg--CAAAcGCc -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGUUUuCGc -5'
7023 5' -46.1 NC_001875.2 + 28357 0.7 0.990861
Target:  5'- cGAAAUAGuUugGCGCCUUUaAAAGGUc -3'
miRNA:   3'- -UUUUAUC-GugCGCGGAAAgUUUUCGc -5'
7023 5' -46.1 NC_001875.2 + 28926 0.71 0.986181
Target:  5'- --cGUGGC-CGCGUaUUUCGAGAGUGg -3'
miRNA:   3'- uuuUAUCGuGCGCGgAAAGUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 31871 0.66 0.99987
Target:  5'- --cGUGGaCugGCGCCgguugCAAGuuGGCGa -3'
miRNA:   3'- uuuUAUC-GugCGCGGaaa--GUUU--UCGC- -5'
7023 5' -46.1 NC_001875.2 + 32793 0.67 0.999415
Target:  5'- uGGGcgGGCGcCGCGCCgg-CAAGcucGGCGa -3'
miRNA:   3'- -UUUuaUCGU-GCGCGGaaaGUUU---UCGC- -5'
7023 5' -46.1 NC_001875.2 + 33045 0.66 0.99983
Target:  5'- ----gGGCGcCGCGCCgcgCGGAuAGCGu -3'
miRNA:   3'- uuuuaUCGU-GCGCGGaaaGUUU-UCGC- -5'
7023 5' -46.1 NC_001875.2 + 34113 0.67 0.999536
Target:  5'- ----gAGCGCGCGCgCUcgCGGucuAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCG-GAaaGUUu--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.