Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7023 | 5' | -46.1 | NC_001875.2 | + | 129981 | 1.07 | 0.024236 |
Target: 5'- aAAAAUAGCACGCGCCUUUCAAAAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101131 | 1.07 | 0.025752 |
Target: 5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101263 | 1.07 | 0.025752 |
Target: 5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101527 | 1.07 | 0.025752 |
Target: 5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101593 | 1.07 | 0.025752 |
Target: 5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130371 | 1.07 | 0.025752 |
Target: 5'- aAAAGUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130533 | 1.07 | 0.025752 |
Target: 5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101461 | 1.01 | 0.058056 |
Target: 5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101395 | 1.01 | 0.058056 |
Target: 5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101329 | 1.01 | 0.058056 |
Target: 5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 101197 | 1.01 | 0.058056 |
Target: 5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130047 | 0.98 | 0.087856 |
Target: 5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130173 | 0.98 | 0.087856 |
Target: 5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130239 | 0.98 | 0.087856 |
Target: 5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130305 | 0.98 | 0.093157 |
Target: 5'- aAAAAUAGCACGCGCCgUUCGAGAGCGc -3' miRNA: 3'- -UUUUAUCGUGCGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 17064 | 0.91 | 0.206388 |
Target: 5'- aAAAAUAGCACGCG-CUUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGCGCgGAAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130471 | 0.91 | 0.230021 |
Target: 5'- ---cUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuuuAUCGUGCGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 17129 | 0.85 | 0.460934 |
Target: 5'- aAAAAUAGCACaCGCCgUUCGAGAGCGu -3' miRNA: 3'- -UUUUAUCGUGcGCGGaAAGUUUUCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 129097 | 0.79 | 0.736077 |
Target: 5'- -----cGCugGCGCCUUUCAAugacAGCGa -3' miRNA: 3'- uuuuauCGugCGCGGAAAGUUu---UCGC- -5' |
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7023 | 5' | -46.1 | NC_001875.2 | + | 130111 | 0.77 | 0.827342 |
Target: 5'- ---cUAGCACaCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuuuAUCGUGcGCGGaAAGUUUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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