miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7026 5' -52.9 NC_001875.2 + 93393 0.66 0.959534
Target:  5'- ---cUAGCGCGCGCCggcacuugcugcUUUCGuAG-GCGg -3'
miRNA:   3'- uuucAUCGUGCGCGG------------AAAGC-UCuCGC- -5'
7026 5' -52.9 NC_001875.2 + 1914 0.66 0.959534
Target:  5'- cGGGUGcGCACGCGCUUgaaaGGAGUGu -3'
miRNA:   3'- uUUCAU-CGUGCGCGGAaagcUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 91754 0.66 0.955641
Target:  5'- -cAGUGGCGCGUcagcgccgcgGCCUcgUCGuAGuGCGg -3'
miRNA:   3'- uuUCAUCGUGCG----------CGGAa-AGC-UCuCGC- -5'
7026 5' -52.9 NC_001875.2 + 26275 0.66 0.955641
Target:  5'- --uGUA-CACGCGCCU--UGAGuGCGa -3'
miRNA:   3'- uuuCAUcGUGCGCGGAaaGCUCuCGC- -5'
7026 5' -52.9 NC_001875.2 + 43307 0.66 0.955641
Target:  5'- uGGGGUAGCgGCGCGCgCg--CGGGucGGCGu -3'
miRNA:   3'- -UUUCAUCG-UGCGCG-GaaaGCUC--UCGC- -5'
7026 5' -52.9 NC_001875.2 + 82704 0.66 0.951501
Target:  5'- -uGGUAGCGC-CGCCagUCGcgcaGGGGCa -3'
miRNA:   3'- uuUCAUCGUGcGCGGaaAGC----UCUCGc -5'
7026 5' -52.9 NC_001875.2 + 9637 0.66 0.951073
Target:  5'- --cGU-GCGCGCGCCgugcgugUUUCGcGAGCu -3'
miRNA:   3'- uuuCAuCGUGCGCGG-------AAAGCuCUCGc -5'
7026 5' -52.9 NC_001875.2 + 84315 0.66 0.94711
Target:  5'- -uAGUAGCG-GCGCCUgcgguaccCG-GAGCGg -3'
miRNA:   3'- uuUCAUCGUgCGCGGAaa------GCuCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 52349 0.66 0.942464
Target:  5'- cAAGUgcGGCGCGUGCCg--CGccagcguccaAGAGCGc -3'
miRNA:   3'- uUUCA--UCGUGCGCGGaaaGC----------UCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 86927 0.66 0.942464
Target:  5'- ----aAGCGC-CGCCUagagugCGAGGGCGa -3'
miRNA:   3'- uuucaUCGUGcGCGGAaa----GCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 114937 0.66 0.942464
Target:  5'- ----aGGCcCGCGCCgucgUCGAuGGGCGu -3'
miRNA:   3'- uuucaUCGuGCGCGGaa--AGCU-CUCGC- -5'
7026 5' -52.9 NC_001875.2 + 49323 0.66 0.942464
Target:  5'- -cAGUuGCACGgGCCgccCGAgGAGCGc -3'
miRNA:   3'- uuUCAuCGUGCgCGGaaaGCU-CUCGC- -5'
7026 5' -52.9 NC_001875.2 + 17199 0.67 0.937561
Target:  5'- ---aUAGCACaCGCCgUUCGcGAGCGc -3'
miRNA:   3'- uuucAUCGUGcGCGGaAAGCuCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 62235 0.67 0.926977
Target:  5'- cAGGGUGGaCGCGCGCCg--CGuaaAGCGc -3'
miRNA:   3'- -UUUCAUC-GUGCGCGGaaaGCuc-UCGC- -5'
7026 5' -52.9 NC_001875.2 + 37575 0.67 0.921293
Target:  5'- cGAGUGG-AUGCGCCgg-CGcGAGCGc -3'
miRNA:   3'- uUUCAUCgUGCGCGGaaaGCuCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 50553 0.68 0.902686
Target:  5'- --cGgcGCGCGUGUCUUUUGcGGGGCa -3'
miRNA:   3'- uuuCauCGUGCGCGGAAAGC-UCUCGc -5'
7026 5' -52.9 NC_001875.2 + 74120 0.68 0.895971
Target:  5'- ---cUGGCGCGUguucGCCUagagcuggagUUCGAGGGCGc -3'
miRNA:   3'- uuucAUCGUGCG----CGGA----------AAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 85226 0.68 0.881792
Target:  5'- -cGGUAGCGC-CGCaugUCGAcGAGCGc -3'
miRNA:   3'- uuUCAUCGUGcGCGgaaAGCU-CUCGC- -5'
7026 5' -52.9 NC_001875.2 + 79311 0.69 0.833652
Target:  5'- ---cUGGCGCGUG-CUUUCGAuGAGCGc -3'
miRNA:   3'- uuucAUCGUGCGCgGAAAGCU-CUCGC- -5'
7026 5' -52.9 NC_001875.2 + 31980 0.69 0.833652
Target:  5'- --uGUGGCGCGCguacgGCCggUUUGuGAGCGg -3'
miRNA:   3'- uuuCAUCGUGCG-----CGGa-AAGCuCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.