Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 218 | 0.73 | 0.128355 |
Target: 5'- cGCGccGCCCcGCGCGccgccCCCGCC-GCCCu -3' miRNA: 3'- -CGUuuUGGGcCGCGU-----GGGCGGaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 3212 | 0.7 | 0.204525 |
Target: 5'- cGCAuuuauguGCCUuaUGUaacuGCCCGCCUGCCCa -3' miRNA: 3'- -CGUuu-----UGGGccGCG----UGGGCGGACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 5176 | 0.76 | 0.079165 |
Target: 5'- uGCGAGACCCaGUGCcCCCGC-UGCCa -3' miRNA: 3'- -CGUUUUGGGcCGCGuGGGCGgACGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 6191 | 0.69 | 0.23777 |
Target: 5'- uGCAcAGACCCauugacuauuuugauCGCACCCuaCUGCCCg -3' miRNA: 3'- -CGU-UUUGGGcc-------------GCGUGGGcgGACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 7774 | 0.66 | 0.375141 |
Target: 5'- aGCAu--CCCGGCccGCGCUgacaggccgCGCCUuCCCu -3' miRNA: 3'- -CGUuuuGGGCCG--CGUGG---------GCGGAcGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 8330 | 0.67 | 0.301572 |
Target: 5'- cGCGAccAGCUCGGUGgACCgUGgCUGCCa -3' miRNA: 3'- -CGUU--UUGGGCCGCgUGG-GCgGACGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 8917 | 0.67 | 0.320046 |
Target: 5'- -----cCCCGGCGUAUCCGCauCUccuggguaacggcacGCCCg -3' miRNA: 3'- cguuuuGGGCCGCGUGGGCG--GA---------------CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 9830 | 0.7 | 0.188697 |
Target: 5'- gGCG--GCCCuGGCGUACUC-CCggGCCCg -3' miRNA: 3'- -CGUuuUGGG-CCGCGUGGGcGGa-CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10255 | 0.68 | 0.259015 |
Target: 5'- aCAAGGCCgGucggcaguuGCGCGCCgGCaUGCCCc -3' miRNA: 3'- cGUUUUGGgC---------CGCGUGGgCGgACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10322 | 0.68 | 0.252418 |
Target: 5'- gGC--AugCCGGCGCGCaaCUGCCgaccgGCCUu -3' miRNA: 3'- -CGuuUugGGCCGCGUG--GGCGGa----CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10516 | 0.69 | 0.23964 |
Target: 5'- cGCAGAAcCCCGGCaGCAagacCCUuaCgGCCCa -3' miRNA: 3'- -CGUUUU-GGGCCG-CGU----GGGcgGaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 11016 | 0.68 | 0.27263 |
Target: 5'- cGCGcGACCgCGGCG-GCCgcuuUGCCgggGCCCg -3' miRNA: 3'- -CGUuUUGG-GCCGCgUGG----GCGGa--CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 11581 | 0.8 | 0.037089 |
Target: 5'- ---cGGCCCGGUGCGCUCGCgCUGCgCCa -3' miRNA: 3'- cguuUUGGGCCGCGUGGGCG-GACG-GG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 12474 | 0.68 | 0.259015 |
Target: 5'- cGCGu--CUCGcGCGCACacaccaCCGCCgccGCCCg -3' miRNA: 3'- -CGUuuuGGGC-CGCGUG------GGCGGa--CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 12517 | 0.72 | 0.147528 |
Target: 5'- cGCGAGACgCgGGCGCcgaAgCCGCCgcgugccGCCCa -3' miRNA: 3'- -CGUUUUG-GgCCGCG---UgGGCGGa------CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 12700 | 0.68 | 0.252418 |
Target: 5'- cGCGc-GCCCGGCgacGCGCCucucugCGCCUGUgCCg -3' miRNA: 3'- -CGUuuUGGGCCG---CGUGG------GCGGACG-GG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14611 | 0.66 | 0.366393 |
Target: 5'- cGCGGcGACCCacccgaccGGUGCGgCUGCCccaggcgGCCCg -3' miRNA: 3'- -CGUU-UUGGG--------CCGCGUgGGCGGa------CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14744 | 0.75 | 0.094028 |
Target: 5'- cGCAAccuucuGACUCGGCGCACCCcucGCCgucugcgGCgCCg -3' miRNA: 3'- -CGUU------UUGGGCCGCGUGGG---CGGa------CG-GG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14835 | 0.66 | 0.375141 |
Target: 5'- aGCGGccgcGCgCCGGCcCACCCuGCggGCCCu -3' miRNA: 3'- -CGUUu---UG-GGCCGcGUGGG-CGgaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 15372 | 0.67 | 0.301572 |
Target: 5'- ----cGCCCGGCGCGCgCUcCCUccGUCCg -3' miRNA: 3'- cguuuUGGGCCGCGUG-GGcGGA--CGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home