Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 15382 | 1.13 | 0.000102 |
Target: 5'- cGCAAAACCCGGCGCACCCGCCUGCCCu -3' miRNA: 3'- -CGUUUUGGGCCGCGUGGGCGGACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16048 | 0.66 | 0.369875 |
Target: 5'- cGCAAGcCCCGcGUGCACCgugcuacuaggCGUacugcgcgcggcuugCUGCCCu -3' miRNA: 3'- -CGUUUuGGGC-CGCGUGG-----------GCG---------------GACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16160 | 0.69 | 0.24596 |
Target: 5'- --cGAGCUCGGgugUGCGCCUGCCcGCCg -3' miRNA: 3'- cguUUUGGGCC---GCGUGGGCGGaCGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16219 | 0.69 | 0.226809 |
Target: 5'- gGCGAcucCCCGccucaGCGCugCCGCggccgcggcgcugCUGCCCg -3' miRNA: 3'- -CGUUuu-GGGC-----CGCGugGGCG-------------GACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16564 | 0.7 | 0.199125 |
Target: 5'- cGCAGAaggcGCgCgGGCgGCGgCCGCCUGCgCg -3' miRNA: 3'- -CGUUU----UG-GgCCG-CGUgGGCGGACGgG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16639 | 0.68 | 0.286813 |
Target: 5'- -gGAAGCCCccGCGCAggcggCCGCC-GCCCg -3' miRNA: 3'- cgUUUUGGGc-CGCGUg----GGCGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16644 | 0.66 | 0.366393 |
Target: 5'- cGCAAucCCCGGCaucGCAUCagugGCCauucaggcgGCCCa -3' miRNA: 3'- -CGUUuuGGGCCG---CGUGGg---CGGa--------CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 17115 | 0.74 | 0.102127 |
Target: 5'- uGCAAgcccgucuuuuucAGCUgGGCGCGCaaCGCUUGCCCg -3' miRNA: 3'- -CGUU-------------UUGGgCCGCGUGg-GCGGACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 20751 | 0.66 | 0.375141 |
Target: 5'- uGCGAGGCUgGGUGCcaaGCCaugGCCaGCCa -3' miRNA: 3'- -CGUUUUGGgCCGCG---UGGg--CGGaCGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22322 | 0.71 | 0.173957 |
Target: 5'- aGCAAGGCCCGGC-UGgCCGCCgGCa- -3' miRNA: 3'- -CGUUUUGGGCCGcGUgGGCGGaCGgg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22403 | 0.68 | 0.286813 |
Target: 5'- cGCuGAGgCCGcCGCuCCCGCCcUGCCg -3' miRNA: 3'- -CGuUUUgGGCcGCGuGGGCGG-ACGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22435 | 0.66 | 0.384029 |
Target: 5'- aGCGA---UCGGCGCGCgCCGUUUGCg- -3' miRNA: 3'- -CGUUuugGGCCGCGUG-GGCGGACGgg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22649 | 0.75 | 0.083851 |
Target: 5'- -aGAAGCCCuaGGCGCGgCCGCUucgGCCCc -3' miRNA: 3'- cgUUUUGGG--CCGCGUgGGCGGa--CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22731 | 0.68 | 0.27965 |
Target: 5'- aGCAGc-CCCGaGC-CGCCCGCC-GCUCc -3' miRNA: 3'- -CGUUuuGGGC-CGcGUGGGCGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 23533 | 0.66 | 0.366393 |
Target: 5'- -gGAAGCUgaGGCGCugCCagaaGCCgaggaGCCCg -3' miRNA: 3'- cgUUUUGGg-CCGCGugGG----CGGa----CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 24391 | 0.67 | 0.316909 |
Target: 5'- cGCu--GCuuGGCGaccaacCCCGCCcUGCUCa -3' miRNA: 3'- -CGuuuUGggCCGCgu----GGGCGG-ACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 24854 | 0.68 | 0.265752 |
Target: 5'- cCGAAGCCUGaGcCGCggaagGCCCGgCUGCCg -3' miRNA: 3'- cGUUUUGGGC-C-GCG-----UGGGCgGACGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25241 | 0.69 | 0.24596 |
Target: 5'- uGCAGAGCuCCGGCaGCA-CUGCCUucacucGCCg -3' miRNA: 3'- -CGUUUUG-GGCCG-CGUgGGCGGA------CGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25393 | 0.66 | 0.341002 |
Target: 5'- uGCc-AGCgCGGCGCGCCC-UC-GCCCu -3' miRNA: 3'- -CGuuUUGgGCCGCGUGGGcGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25434 | 0.73 | 0.111509 |
Target: 5'- aGCGu-GCUCgGGCGC-CCCGCC-GCCCc -3' miRNA: 3'- -CGUuuUGGG-CCGCGuGGGCGGaCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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