Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 3212 | 0.7 | 0.204525 |
Target: 5'- cGCAuuuauguGCCUuaUGUaacuGCCCGCCUGCCCa -3' miRNA: 3'- -CGUuu-----UGGGccGCG----UGGGCGGACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 16219 | 0.69 | 0.226809 |
Target: 5'- gGCGAcucCCCGccucaGCGCugCCGCggccgcggcgcugCUGCCCg -3' miRNA: 3'- -CGUUuu-GGGC-----CGCGugGGCG-------------GACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10516 | 0.69 | 0.23964 |
Target: 5'- cGCAGAAcCCCGGCaGCAagacCCUuaCgGCCCa -3' miRNA: 3'- -CGUUUU-GGGCCG-CGU----GGGcgGaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 16160 | 0.69 | 0.24596 |
Target: 5'- --cGAGCUCGGgugUGCGCCUGCCcGCCg -3' miRNA: 3'- cguUUUGGGCC---GCGUGGGCGGaCGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 25241 | 0.69 | 0.24596 |
Target: 5'- uGCAGAGCuCCGGCaGCA-CUGCCUucacucGCCg -3' miRNA: 3'- -CGUUUUG-GGCCG-CGUgGGCGGA------CGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10255 | 0.68 | 0.259015 |
Target: 5'- aCAAGGCCgGucggcaguuGCGCGCCgGCaUGCCCc -3' miRNA: 3'- cGUUUUGGgC---------CGCGUGGgCGgACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 10322 | 0.68 | 0.252418 |
Target: 5'- gGC--AugCCGGCGCGCaaCUGCCgaccgGCCUu -3' miRNA: 3'- -CGuuUugGGCCGCGUG--GGCGGa----CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 6191 | 0.69 | 0.23777 |
Target: 5'- uGCAcAGACCCauugacuauuuugauCGCACCCuaCUGCCCg -3' miRNA: 3'- -CGU-UUUGGGcc-------------GCGUGGGcgGACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 12517 | 0.72 | 0.147528 |
Target: 5'- cGCGAGACgCgGGCGCcgaAgCCGCCgcgugccGCCCa -3' miRNA: 3'- -CGUUUUG-GgCCGCG---UgGGCGGa------CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 218 | 0.73 | 0.128355 |
Target: 5'- cGCGccGCCCcGCGCGccgccCCCGCC-GCCCu -3' miRNA: 3'- -CGUuuUGGGcCGCGU-----GGGCGGaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 17115 | 0.74 | 0.102127 |
Target: 5'- uGCAAgcccgucuuuuucAGCUgGGCGCGCaaCGCUUGCCCg -3' miRNA: 3'- -CGUU-------------UUGGgCCGCGUGg-GCGGACGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14744 | 0.75 | 0.094028 |
Target: 5'- cGCAAccuucuGACUCGGCGCACCCcucGCCgucugcgGCgCCg -3' miRNA: 3'- -CGUU------UUGGGCCGCGUGGG---CGGa------CG-GG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 12700 | 0.68 | 0.252418 |
Target: 5'- cGCGc-GCCCGGCgacGCGCCucucugCGCCUGUgCCg -3' miRNA: 3'- -CGUuuUGGGCCG---CGUGG------GCGGACG-GG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 24854 | 0.68 | 0.265752 |
Target: 5'- cCGAAGCCUGaGcCGCggaagGCCCGgCUGCCg -3' miRNA: 3'- cGUUUUGGGC-C-GCG-----UGGGCgGACGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 22403 | 0.68 | 0.286813 |
Target: 5'- cGCuGAGgCCGcCGCuCCCGCCcUGCCg -3' miRNA: 3'- -CGuUUUgGGCcGCGuGGGCGG-ACGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 16639 | 0.68 | 0.286813 |
Target: 5'- -gGAAGCCCccGCGCAggcggCCGCC-GCCCg -3' miRNA: 3'- cgUUUUGGGc-CGCGUg----GGCGGaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14611 | 0.66 | 0.366393 |
Target: 5'- cGCGGcGACCCacccgaccGGUGCGgCUGCCccaggcgGCCCg -3' miRNA: 3'- -CGUU-UUGGG--------CCGCGUgGGCGGa------CGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 14835 | 0.66 | 0.375141 |
Target: 5'- aGCGGccgcGCgCCGGCcCACCCuGCggGCCCu -3' miRNA: 3'- -CGUUu---UG-GGCCGcGUGGG-CGgaCGGG- -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 20751 | 0.66 | 0.375141 |
Target: 5'- uGCGAGGCUgGGUGCcaaGCCaugGCCaGCCa -3' miRNA: 3'- -CGUUUUGGgCCGCG---UGGg--CGGaCGGg -5' |
|||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 15382 | 1.13 | 0.000102 |
Target: 5'- cGCAAAACCCGGCGCACCCGCCUGCCCu -3' miRNA: 3'- -CGUUUUGGGCCGCGUGGGCGGACGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home