Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7037 | 3' | -59.6 | NC_001876.1 | + | 27173 | 0.66 | 0.341002 |
Target: 5'- cCAAcGACCCGGCcuCGCCUGUgUggcGCCCa -3' miRNA: 3'- cGUU-UUGGGCCGc-GUGGGCGgA---CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 12474 | 0.68 | 0.259015 |
Target: 5'- cGCGu--CUCGcGCGCACacaccaCCGCCgccGCCCg -3' miRNA: 3'- -CGUuuuGGGC-CGCGUG------GGCGGa--CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 11016 | 0.68 | 0.27263 |
Target: 5'- cGCGcGACCgCGGCG-GCCgcuuUGCCgggGCCCg -3' miRNA: 3'- -CGUuUUGG-GCCGCgUGG----GCGGa--CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22731 | 0.68 | 0.27965 |
Target: 5'- aGCAGc-CCCGaGC-CGCCCGCC-GCUCc -3' miRNA: 3'- -CGUUuuGGGC-CGcGUGGGCGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 8330 | 0.67 | 0.301572 |
Target: 5'- cGCGAccAGCUCGGUGgACCgUGgCUGCCa -3' miRNA: 3'- -CGUU--UUGGGCCGCgUGG-GCgGACGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 15372 | 0.67 | 0.301572 |
Target: 5'- ----cGCCCGGCGCGCgCUcCCUccGUCCg -3' miRNA: 3'- cguuuUGGGCCGCGUG-GGcGGA--CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 24391 | 0.67 | 0.316909 |
Target: 5'- cGCu--GCuuGGCGaccaacCCCGCCcUGCUCa -3' miRNA: 3'- -CGuuuUGggCCGCgu----GGGCGG-ACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 8917 | 0.67 | 0.320046 |
Target: 5'- -----cCCCGGCGUAUCCGCauCUccuggguaacggcacGCCCg -3' miRNA: 3'- cguuuuGGGCCGCGUGGGCG--GA---------------CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25393 | 0.66 | 0.341002 |
Target: 5'- uGCc-AGCgCGGCGCGCCC-UC-GCCCu -3' miRNA: 3'- -CGuuUUGgGCCGCGUGGGcGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 10255 | 0.68 | 0.259015 |
Target: 5'- aCAAGGCCgGucggcaguuGCGCGCCgGCaUGCCCc -3' miRNA: 3'- cGUUUUGGgC---------CGCGUGGgCGgACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25241 | 0.69 | 0.24596 |
Target: 5'- uGCAGAGCuCCGGCaGCA-CUGCCUucacucGCCg -3' miRNA: 3'- -CGUUUUG-GGCCG-CGUgGGCGGA------CGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16160 | 0.69 | 0.24596 |
Target: 5'- --cGAGCUCGGgugUGCGCCUGCCcGCCg -3' miRNA: 3'- cguUUUGGGCC---GCGUGGGCGGaCGGg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 25434 | 0.73 | 0.111509 |
Target: 5'- aGCGu-GCUCgGGCGC-CCCGCC-GCCCc -3' miRNA: 3'- -CGUuuUGGG-CCGCGuGGGCGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 34229 | 0.73 | 0.128355 |
Target: 5'- cGCGccGCCCcGCGCGccgccCCCGCC-GCCCu -3' miRNA: 3'- -CGUuuUGGGcCGCGU-----GGGCGGaCGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 22322 | 0.71 | 0.173957 |
Target: 5'- aGCAAGGCCCGGC-UGgCCGCCgGCa- -3' miRNA: 3'- -CGUUUUGGGCCGcGUgGGCGGaCGgg -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 9830 | 0.7 | 0.188697 |
Target: 5'- gGCG--GCCCuGGCGUACUC-CCggGCCCg -3' miRNA: 3'- -CGUuuUGGG-CCGCGUGGGcGGa-CGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16564 | 0.7 | 0.199125 |
Target: 5'- cGCAGAaggcGCgCgGGCgGCGgCCGCCUGCgCg -3' miRNA: 3'- -CGUUU----UG-GgCCG-CGUgGGCGGACGgG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 3212 | 0.7 | 0.204525 |
Target: 5'- cGCAuuuauguGCCUuaUGUaacuGCCCGCCUGCCCa -3' miRNA: 3'- -CGUuu-----UGGGccGCG----UGGGCGGACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 16219 | 0.69 | 0.226809 |
Target: 5'- gGCGAcucCCCGccucaGCGCugCCGCggccgcggcgcugCUGCCCg -3' miRNA: 3'- -CGUUuu-GGGC-----CGCGugGGCG-------------GACGGG- -5' |
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7037 | 3' | -59.6 | NC_001876.1 | + | 10516 | 0.69 | 0.23964 |
Target: 5'- cGCAGAAcCCCGGCaGCAagacCCUuaCgGCCCa -3' miRNA: 3'- -CGUUUU-GGGCCG-CGU----GGGcgGaCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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