miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7037 3' -59.6 NC_001876.1 + 12474 0.68 0.259015
Target:  5'- cGCGu--CUCGcGCGCACacaccaCCGCCgccGCCCg -3'
miRNA:   3'- -CGUuuuGGGC-CGCGUG------GGCGGa--CGGG- -5'
7037 3' -59.6 NC_001876.1 + 10255 0.68 0.259015
Target:  5'- aCAAGGCCgGucggcaguuGCGCGCCgGCaUGCCCc -3'
miRNA:   3'- cGUUUUGGgC---------CGCGUGGgCGgACGGG- -5'
7037 3' -59.6 NC_001876.1 + 12700 0.68 0.252418
Target:  5'- cGCGc-GCCCGGCgacGCGCCucucugCGCCUGUgCCg -3'
miRNA:   3'- -CGUuuUGGGCCG---CGUGG------GCGGACG-GG- -5'
7037 3' -59.6 NC_001876.1 + 10322 0.68 0.252418
Target:  5'- gGC--AugCCGGCGCGCaaCUGCCgaccgGCCUu -3'
miRNA:   3'- -CGuuUugGGCCGCGUG--GGCGGa----CGGG- -5'
7037 3' -59.6 NC_001876.1 + 16160 0.69 0.24596
Target:  5'- --cGAGCUCGGgugUGCGCCUGCCcGCCg -3'
miRNA:   3'- cguUUUGGGCC---GCGUGGGCGGaCGGg -5'
7037 3' -59.6 NC_001876.1 + 25241 0.69 0.24596
Target:  5'- uGCAGAGCuCCGGCaGCA-CUGCCUucacucGCCg -3'
miRNA:   3'- -CGUUUUG-GGCCG-CGUgGGCGGA------CGGg -5'
7037 3' -59.6 NC_001876.1 + 10516 0.69 0.23964
Target:  5'- cGCAGAAcCCCGGCaGCAagacCCUuaCgGCCCa -3'
miRNA:   3'- -CGUUUU-GGGCCG-CGU----GGGcgGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 6191 0.69 0.23777
Target:  5'- uGCAcAGACCCauugacuauuuugauCGCACCCuaCUGCCCg -3'
miRNA:   3'- -CGU-UUUGGGcc-------------GCGUGGGcgGACGGG- -5'
7037 3' -59.6 NC_001876.1 + 16219 0.69 0.226809
Target:  5'- gGCGAcucCCCGccucaGCGCugCCGCggccgcggcgcugCUGCCCg -3'
miRNA:   3'- -CGUUuu-GGGC-----CGCGugGGCG-------------GACGGG- -5'
7037 3' -59.6 NC_001876.1 + 3212 0.7 0.204525
Target:  5'- cGCAuuuauguGCCUuaUGUaacuGCCCGCCUGCCCa -3'
miRNA:   3'- -CGUuu-----UGGGccGCG----UGGGCGGACGGG- -5'
7037 3' -59.6 NC_001876.1 + 16564 0.7 0.199125
Target:  5'- cGCAGAaggcGCgCgGGCgGCGgCCGCCUGCgCg -3'
miRNA:   3'- -CGUUU----UG-GgCCG-CGUgGGCGGACGgG- -5'
7037 3' -59.6 NC_001876.1 + 9830 0.7 0.188697
Target:  5'- gGCG--GCCCuGGCGUACUC-CCggGCCCg -3'
miRNA:   3'- -CGUuuUGGG-CCGCGUGGGcGGa-CGGG- -5'
7037 3' -59.6 NC_001876.1 + 22322 0.71 0.173957
Target:  5'- aGCAAGGCCCGGC-UGgCCGCCgGCa- -3'
miRNA:   3'- -CGUUUUGGGCCGcGUgGGCGGaCGgg -5'
7037 3' -59.6 NC_001876.1 + 12517 0.72 0.147528
Target:  5'- cGCGAGACgCgGGCGCcgaAgCCGCCgcgugccGCCCa -3'
miRNA:   3'- -CGUUUUG-GgCCGCG---UgGGCGGa------CGGG- -5'
7037 3' -59.6 NC_001876.1 + 218 0.73 0.128355
Target:  5'- cGCGccGCCCcGCGCGccgccCCCGCC-GCCCu -3'
miRNA:   3'- -CGUuuUGGGcCGCGU-----GGGCGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 34229 0.73 0.128355
Target:  5'- cGCGccGCCCcGCGCGccgccCCCGCC-GCCCu -3'
miRNA:   3'- -CGUuuUGGGcCGCGU-----GGGCGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 25434 0.73 0.111509
Target:  5'- aGCGu-GCUCgGGCGC-CCCGCC-GCCCc -3'
miRNA:   3'- -CGUuuUGGG-CCGCGuGGGCGGaCGGG- -5'
7037 3' -59.6 NC_001876.1 + 17115 0.74 0.102127
Target:  5'- uGCAAgcccgucuuuuucAGCUgGGCGCGCaaCGCUUGCCCg -3'
miRNA:   3'- -CGUU-------------UUGGgCCGCGUGg-GCGGACGGG- -5'
7037 3' -59.6 NC_001876.1 + 14744 0.75 0.094028
Target:  5'- cGCAAccuucuGACUCGGCGCACCCcucGCCgucugcgGCgCCg -3'
miRNA:   3'- -CGUU------UUGGGCCGCGUGGG---CGGa------CG-GG- -5'
7037 3' -59.6 NC_001876.1 + 22649 0.75 0.083851
Target:  5'- -aGAAGCCCuaGGCGCGgCCGCUucgGCCCc -3'
miRNA:   3'- cgUUUUGGG--CCGCGUgGGCGGa--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.