miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7108 5' -61 NC_001895.1 + 17677 0.66 0.300363
Target:  5'- gAGgGCACCcGCGuCAUUuCCACCGUa -3'
miRNA:   3'- -UCgCGUGGcCGCcGUAGuGGUGGCAg -5'
7108 5' -61 NC_001895.1 + 1548 0.66 0.300363
Target:  5'- -aCGCcgacaccgagGCCGGUGGCAUCAaUACCGa- -3'
miRNA:   3'- ucGCG----------UGGCCGCCGUAGUgGUGGCag -5'
7108 5' -61 NC_001895.1 + 1765 0.66 0.292937
Target:  5'- uGGCgacaGCGCCGGauGCGUgguacuggCACCGCCGg- -3'
miRNA:   3'- -UCG----CGUGGCCgcCGUA--------GUGGUGGCag -5'
7108 5' -61 NC_001895.1 + 5254 0.66 0.285655
Target:  5'- gGGCGgcuuccCGCUGcGCGGuCAUCGCUGCCGa- -3'
miRNA:   3'- -UCGC------GUGGC-CGCC-GUAGUGGUGGCag -5'
7108 5' -61 NC_001895.1 + 1713 0.67 0.264667
Target:  5'- -aCGCAuCCGGCGcUGUCGCCACgGUg -3'
miRNA:   3'- ucGCGU-GGCCGCcGUAGUGGUGgCAg -5'
7108 5' -61 NC_001895.1 + 4746 0.67 0.251381
Target:  5'- cAGUGCAUCaaGGCuGGCAuaaUCACCGCCc-- -3'
miRNA:   3'- -UCGCGUGG--CCG-CCGU---AGUGGUGGcag -5'
7108 5' -61 NC_001895.1 + 21688 0.67 0.251381
Target:  5'- -aCGCACCGGCgacaauGGCAgcCACCACgGcCa -3'
miRNA:   3'- ucGCGUGGCCG------CCGUa-GUGGUGgCaG- -5'
7108 5' -61 NC_001895.1 + 29959 0.67 0.244946
Target:  5'- aGGUGUgggaGCCGGUaacgaaGUAUCACCACCGg- -3'
miRNA:   3'- -UCGCG----UGGCCGc-----CGUAGUGGUGGCag -5'
7108 5' -61 NC_001895.1 + 4784 0.67 0.244946
Target:  5'- gGGCGUcagcuACUGGCGGaCAaguauuUCcCCAUCGUCa -3'
miRNA:   3'- -UCGCG-----UGGCCGCC-GU------AGuGGUGGCAG- -5'
7108 5' -61 NC_001895.1 + 13403 0.68 0.220568
Target:  5'- cGCGCugUGGUGGCGUcCugUGCgGUa -3'
miRNA:   3'- uCGCGugGCCGCCGUA-GugGUGgCAg -5'
7108 5' -61 NC_001895.1 + 20551 0.68 0.214805
Target:  5'- aGGCGCGCCagcucGGCGaCAaUACCGCCGcCu -3'
miRNA:   3'- -UCGCGUGG-----CCGCcGUaGUGGUGGCaG- -5'
7108 5' -61 NC_001895.1 + 6774 0.69 0.193034
Target:  5'- aGGUGCuuGCCGGUGGUgaaccuAUCACCcCgCGUCu -3'
miRNA:   3'- -UCGCG--UGGCCGCCG------UAGUGGuG-GCAG- -5'
7108 5' -61 NC_001895.1 + 11579 0.69 0.187901
Target:  5'- aGGUcauUACCGGCGGCAcaggccagcaUCACCGcCCGUg -3'
miRNA:   3'- -UCGc--GUGGCCGCCGU----------AGUGGU-GGCAg -5'
7108 5' -61 NC_001895.1 + 21457 0.69 0.187395
Target:  5'- cGGUGCACUGGCgcuuacuGGCAUCAUCGgUGcCa -3'
miRNA:   3'- -UCGCGUGGCCG-------CCGUAGUGGUgGCaG- -5'
7108 5' -61 NC_001895.1 + 6609 0.69 0.18488
Target:  5'- uGGCugaACUGGgGGCGgugcugccacacggCACCGCCGUCg -3'
miRNA:   3'- -UCGcg-UGGCCgCCGUa-------------GUGGUGGCAG- -5'
7108 5' -61 NC_001895.1 + 8293 0.69 0.18289
Target:  5'- uGGUGCaACCGGCgcacagcaucaGGCAggUCAgCACCGUa -3'
miRNA:   3'- -UCGCG-UGGCCG-----------CCGU--AGUgGUGGCAg -5'
7108 5' -61 NC_001895.1 + 20704 0.69 0.181409
Target:  5'- cAGCGUgACCGGCguugccgccugaauGGCAUCAacauccCCACCGg- -3'
miRNA:   3'- -UCGCG-UGGCCG--------------CCGUAGU------GGUGGCag -5'
7108 5' -61 NC_001895.1 + 18302 0.69 0.17322
Target:  5'- cAGCGCACgGGCGGUggCAUaCGCgGUg -3'
miRNA:   3'- -UCGCGUGgCCGCCGuaGUG-GUGgCAg -5'
7108 5' -61 NC_001895.1 + 10686 0.69 0.168558
Target:  5'- gAGUGCACUGGUuucgGGUucauauucaAUCACCGCCccGUCa -3'
miRNA:   3'- -UCGCGUGGCCG----CCG---------UAGUGGUGG--CAG- -5'
7108 5' -61 NC_001895.1 + 7746 0.7 0.151017
Target:  5'- cAGCGauuCCGGCGGCAgcUC-CCGcCCGUa -3'
miRNA:   3'- -UCGCgu-GGCCGCCGU--AGuGGU-GGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.