miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7128 5' -43.2 NC_001895.1 + 8078 0.66 0.998792
Target:  5'- cUGCUGAccgcugGCGACGUugu-UCGCCc -3'
miRNA:   3'- cGCGACUaua---UGUUGCGuuuuAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 28357 0.66 0.998491
Target:  5'- gGCGCUGAUucAC-ACGCucAAUgCGCg -3'
miRNA:   3'- -CGCGACUAuaUGuUGCGuuUUA-GUGg -5'
7128 5' -43.2 NC_001895.1 + 7264 0.66 0.998491
Target:  5'- aGCuGCUGAUA-GCGAC-CGGAGgccguggauuuuUCACCg -3'
miRNA:   3'- -CG-CGACUAUaUGUUGcGUUUU------------AGUGG- -5'
7128 5' -43.2 NC_001895.1 + 28925 0.66 0.998491
Target:  5'- uUGCcGGUAUugAGCGU----UCGCCg -3'
miRNA:   3'- cGCGaCUAUAugUUGCGuuuuAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 29631 0.66 0.998281
Target:  5'- aGCGCgcagGGUGggGCAaaugucccGCGCGAuugucagacugucagGGUCGCCc -3'
miRNA:   3'- -CGCGa---CUAUa-UGU--------UGCGUU---------------UUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 23004 0.66 0.998128
Target:  5'- uGCcCUGGUAUGCAAaGgGAAAUuUACCg -3'
miRNA:   3'- -CGcGACUAUAUGUUgCgUUUUA-GUGG- -5'
7128 5' -43.2 NC_001895.1 + 21352 0.66 0.998128
Target:  5'- cGCGCUGcGUAaGCucACGCAGAcg-GCCa -3'
miRNA:   3'- -CGCGAC-UAUaUGu-UGCGUUUuagUGG- -5'
7128 5' -43.2 NC_001895.1 + 17990 0.66 0.997877
Target:  5'- gGUGCcgaUGAUAUugGaaacggucuGCGCGAGuuucguuuccucgucAUCACCg -3'
miRNA:   3'- -CGCG---ACUAUAugU---------UGCGUUU---------------UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 23026 0.66 0.997694
Target:  5'- -aGCcGAUAUACAcCGuCAGGAcagCGCCa -3'
miRNA:   3'- cgCGaCUAUAUGUuGC-GUUUUa--GUGG- -5'
7128 5' -43.2 NC_001895.1 + 20906 0.67 0.996572
Target:  5'- gGCGCUGc---AUGAUGCAaAAAUCACa -3'
miRNA:   3'- -CGCGACuauaUGUUGCGU-UUUAGUGg -5'
7128 5' -43.2 NC_001895.1 + 22777 0.67 0.995862
Target:  5'- uGCGCUGAcAUuuGAUGCAGgcAGUaCGCUg -3'
miRNA:   3'- -CGCGACUaUAugUUGCGUU--UUA-GUGG- -5'
7128 5' -43.2 NC_001895.1 + 12587 0.67 0.995862
Target:  5'- uUGCUGAUGc-CAAaccUGCAAGccGUCACCu -3'
miRNA:   3'- cGCGACUAUauGUU---GCGUUU--UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 22673 0.67 0.995785
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUUgCGUUUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 12431 0.68 0.99408
Target:  5'- uCGCgGAUA-ACGGCGCGuuuuGUCGCUu -3'
miRNA:   3'- cGCGaCUAUaUGUUGCGUuu--UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 7834 0.68 0.99408
Target:  5'- cGCGCUGAUuUAUcuUGUGGuGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 29340 0.68 0.992981
Target:  5'- gGUGCUGcgggGUAUAuCGCGAAAUaCAUCu -3'
miRNA:   3'- -CGCGACua--UAUGUuGCGUUUUA-GUGG- -5'
7128 5' -43.2 NC_001895.1 + 4617 0.68 0.992981
Target:  5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3'
miRNA:   3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 22820 0.68 0.988686
Target:  5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3'
miRNA:   3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 27613 0.69 0.986871
Target:  5'- uGCGCUGGUuUGCGAagaGUGuGAcgCGCCa -3'
miRNA:   3'- -CGCGACUAuAUGUUg--CGU-UUuaGUGG- -5'
7128 5' -43.2 NC_001895.1 + 6856 0.69 0.986871
Target:  5'- uGCGCccGAUAaACAGaCGCGGGGugauagguUCACCa -3'
miRNA:   3'- -CGCGa-CUAUaUGUU-GCGUUUU--------AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.