miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 12620 0.66 0.558213
Target:  5'- aGC-UCGGCGaGCUGCGgccCGGuGAGGCCg -3'
miRNA:   3'- -CGuGGCUGC-CGGUGUa--GCCcUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 12758 0.68 0.443842
Target:  5'- cGC-CCGuccgaccauccucaGCGaCCACGUCGuGGAGGGCa -3'
miRNA:   3'- -CGuGGC--------------UGCcGGUGUAGC-CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 13025 0.67 0.466127
Target:  5'- gGCGgCGAgGGCUgagccuaacuugACAUccacCGGGAggGGGCCg -3'
miRNA:   3'- -CGUgGCUgCCGG------------UGUA----GCCCU--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15188 0.73 0.229424
Target:  5'- cGCgGCUGACGGguaCCACGUCGaGAAGGaCCa -3'
miRNA:   3'- -CG-UGGCUGCC---GGUGUAGCcCUUCC-GG- -5'
7167 3' -58.2 NC_001900.1 + 15281 0.67 0.496035
Target:  5'- -gGCCG-UGGCCGCA-CGGuucGGCCg -3'
miRNA:   3'- cgUGGCuGCCGGUGUaGCCcuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 17172 0.71 0.280677
Target:  5'- -gACCGAgCGGUUcCGUCGagaGGGAGGCCg -3'
miRNA:   3'- cgUGGCU-GCCGGuGUAGC---CCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 17244 0.66 0.526781
Target:  5'- cGCACUGGCGaGUUcuuCAcCGGGcucGGGCCg -3'
miRNA:   3'- -CGUGGCUGC-CGGu--GUaGCCCu--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 19582 0.67 0.506198
Target:  5'- cGCugCGGaucaagguCGGCCGCGagcaGGGcGGGCUc -3'
miRNA:   3'- -CGugGCU--------GCCGGUGUag--CCCuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 20128 0.69 0.365366
Target:  5'- gGCGCUGAUGGCCgACGaCGuaAAGGUCa -3'
miRNA:   3'- -CGUGGCUGCCGG-UGUaGCccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 20364 0.68 0.44098
Target:  5'- --uUCGACGGCCaggagcugcccugguACAUCGccgaGGAGGGCa -3'
miRNA:   3'- cguGGCUGCCGG---------------UGUAGC----CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 20586 0.66 0.567751
Target:  5'- --uCCGACGG--ACAUCuGGGAguggaugGGGCCg -3'
miRNA:   3'- cguGGCUGCCggUGUAG-CCCU-------UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 21584 0.69 0.382542
Target:  5'- uCGCCGACGGCCGgcUC---AAGGCCg -3'
miRNA:   3'- cGUGGCUGCCGGUguAGcccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23319 0.7 0.324804
Target:  5'- uGCGCCGgggcGCGGcCCGCGUCGGcGAGaagaucgucgucGGCa -3'
miRNA:   3'- -CGUGGC----UGCC-GGUGUAGCC-CUU------------CCGg -5'
7167 3' -58.2 NC_001900.1 + 23344 0.77 0.121044
Target:  5'- aUACCGGCGGCgGCuacggAUCGGGcaGAGGCUa -3'
miRNA:   3'- cGUGGCUGCCGgUG-----UAGCCC--UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23585 0.66 0.558213
Target:  5'- cGgGCCGugGgaGCCACGcUGGcGGcucAGGCCg -3'
miRNA:   3'- -CgUGGCugC--CGGUGUaGCC-CU---UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23832 0.73 0.20157
Target:  5'- gGCGCUGGCuuccGGCgCugGggcUGGGAAGGCCa -3'
miRNA:   3'- -CGUGGCUG----CCG-GugUa--GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 24038 0.66 0.53719
Target:  5'- aCGCC--UGGCCACGggcacCGGGAccaccGGCCa -3'
miRNA:   3'- cGUGGcuGCCGGUGUa----GCCCUu----CCGG- -5'
7167 3' -58.2 NC_001900.1 + 24552 0.68 0.436232
Target:  5'- cGCGCCGACcGCCgugaccggagucaGCAcCGGGucgaacgcuGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGG-------------UGUaGCCCuu-------CCGG- -5'
7167 3' -58.2 NC_001900.1 + 25115 0.68 0.456365
Target:  5'- aCAcCCGAUGGUC-CGUgGGuGGAGGUCa -3'
miRNA:   3'- cGU-GGCUGCCGGuGUAgCC-CUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 25252 0.69 0.391329
Target:  5'- aGCGCCGAUaGCCGaccggagcccguCGUCGGaccacAGGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGGU------------GUAGCCc----UUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.