miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 41725 0.66 0.568813
Target:  5'- gGUucuCUGA-GGCCACGUCGGcgucGGAGGUa -3'
miRNA:   3'- -CGu--GGCUgCCGGUGUAGCC----CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 19582 0.67 0.506198
Target:  5'- cGCugCGGaucaagguCGGCCGCGagcaGGGcGGGCUc -3'
miRNA:   3'- -CGugGCU--------GCCGGUGUag--CCCuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 45416 0.66 0.54767
Target:  5'- cGUACCuGAagccuccacCGGCCAUGcCGGGGuaGGGCUc -3'
miRNA:   3'- -CGUGG-CU---------GCCGGUGUaGCCCU--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 7961 0.69 0.391329
Target:  5'- cGCgGCCGGUGGCCGCAUCG---AGGCg -3'
miRNA:   3'- -CG-UGGCUGCCGGUGUAGCccuUCCGg -5'
7167 3' -58.2 NC_001900.1 + 20586 0.66 0.567751
Target:  5'- --uCCGACGG--ACAUCuGGGAguggaugGGGCCg -3'
miRNA:   3'- cguGGCUGCCggUGUAG-CCCU-------UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 43822 0.7 0.347913
Target:  5'- -aACCGGaacGCCgcuucugGCGUCGGGAAcGGCCa -3'
miRNA:   3'- cgUGGCUgc-CGG-------UGUAGCCCUU-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 43040 0.7 0.340617
Target:  5'- -aGCCGGggagcguccCGG-UACAUCGGGuGAGGCCg -3'
miRNA:   3'- cgUGGCU---------GCCgGUGUAGCCC-UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 17244 0.66 0.526781
Target:  5'- cGCACUGGCGaGUUcuuCAcCGGGcucGGGCCg -3'
miRNA:   3'- -CGUGGCUGC-CGGu--GUaGCCCu--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 38894 0.67 0.516448
Target:  5'- gGCcCUGAUGGCCuCAgCGG--AGGCCg -3'
miRNA:   3'- -CGuGGCUGCCGGuGUaGCCcuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15188 0.73 0.229424
Target:  5'- cGCgGCUGACGGguaCCACGUCGaGAAGGaCCa -3'
miRNA:   3'- -CG-UGGCUGCC---GGUGUAGCcCUUCC-GG- -5'
7167 3' -58.2 NC_001900.1 + 34567 0.71 0.273123
Target:  5'- cCGCCGAUGGCgGC-UCGGGucaggauguauucGGGGUCa -3'
miRNA:   3'- cGUGGCUGCCGgUGuAGCCC-------------UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 38717 0.68 0.446715
Target:  5'- -aGCCuucGCGGCgUACGUCGGGGugcucGGGUCa -3'
miRNA:   3'- cgUGGc--UGCCG-GUGUAGCCCU-----UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 10540 0.67 0.466127
Target:  5'- cGCACUGACccGCUACucgCGGGAcauGGCg -3'
miRNA:   3'- -CGUGGCUGc-CGGUGua-GCCCUu--CCGg -5'
7167 3' -58.2 NC_001900.1 + 6332 0.67 0.475995
Target:  5'- cGCGa-GAUGGUCaacgACAUCGaGGAGGGUCu -3'
miRNA:   3'- -CGUggCUGCCGG----UGUAGC-CCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15281 0.67 0.496035
Target:  5'- -gGCCG-UGGCCGCA-CGGuucGGCCg -3'
miRNA:   3'- cgUGGCuGCCGGUGUaGCCcuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 5586 0.69 0.380801
Target:  5'- cGCACCGAgcuggcCGGCCGauccaugacgCGGGGGuGGUCa -3'
miRNA:   3'- -CGUGGCU------GCCGGUgua-------GCCCUU-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 27574 0.69 0.365366
Target:  5'- gGCugCGAUGGCCGCGaacgcCGaGAGGGUg -3'
miRNA:   3'- -CGugGCUGCCGGUGUa----GCcCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 23319 0.7 0.324804
Target:  5'- uGCGCCGgggcGCGGcCCGCGUCGGcGAGaagaucgucgucGGCa -3'
miRNA:   3'- -CGUGGC----UGCC-GGUGUAGCC-CUU------------CCGg -5'
7167 3' -58.2 NC_001900.1 + 41229 0.71 0.302121
Target:  5'- -gGCUGACGGCCGCGaCGGuGAuccacgcugcgGGGCg -3'
miRNA:   3'- cgUGGCUGCCGGUGUaGCC-CU-----------UCCGg -5'
7167 3' -58.2 NC_001900.1 + 17172 0.71 0.280677
Target:  5'- -gACCGAgCGGUUcCGUCGagaGGGAGGCCg -3'
miRNA:   3'- cgUGGCU-GCCGGuGUAGC---CCUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.