miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7170 3' -61.6 NC_001900.1 + 41761 0.66 0.353772
Target:  5'- -gGUUGUagaGGUGCGGCCACUuGUCg -3'
miRNA:   3'- aaCGACGgagCUACGCCGGUGGcCGG- -5'
7170 3' -61.6 NC_001900.1 + 35702 0.66 0.352945
Target:  5'- -cGCUGgacgaugaCCUUGGUGCccuucuucacgucGGCCuccGCUGGCCg -3'
miRNA:   3'- aaCGAC--------GGAGCUACG-------------CCGG---UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 21621 0.66 0.345564
Target:  5'- -cGCgucgGCacaUCGGUGCucGGCUACCcGGUCg -3'
miRNA:   3'- aaCGa---CGg--AGCUACG--CCGGUGG-CCGG- -5'
7170 3' -61.6 NC_001900.1 + 4336 0.66 0.343939
Target:  5'- -aGCUcGCUcggaUCGAcaagguguggcaGCGGCCAgCGGCCu -3'
miRNA:   3'- aaCGA-CGG----AGCUa-----------CGCCGGUgGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 32063 0.66 0.337493
Target:  5'- cUGCcGCCUUGAUGCcguccauGCCgagugcgaccacACCGGCUc -3'
miRNA:   3'- aACGaCGGAGCUACGc------CGG------------UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 42906 0.66 0.337493
Target:  5'- -cGUUGCUcgCGGUGUGGUCGCCGa-- -3'
miRNA:   3'- aaCGACGGa-GCUACGCCGGUGGCcgg -5'
7170 3' -61.6 NC_001900.1 + 27478 0.66 0.337493
Target:  5'- -cGCacgGCCUUGAgcCGGCCGUCGGCg -3'
miRNA:   3'- aaCGa--CGGAGCUacGCCGGUGGCCGg -5'
7170 3' -61.6 NC_001900.1 + 15261 0.66 0.32956
Target:  5'- cUGCUGCaccaguUCGAUgaGCaGUCGCuCGGCCu -3'
miRNA:   3'- aACGACGg-----AGCUA--CGcCGGUG-GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 34800 0.66 0.32956
Target:  5'- cUGCUcGCCUUc--GCgGGCaCACCGGCUc -3'
miRNA:   3'- aACGA-CGGAGcuaCG-CCG-GUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 33032 0.66 0.321766
Target:  5'- cUGCggaGCC-CGAgacuggugcUGCuGGCCACCGccGCCg -3'
miRNA:   3'- aACGa--CGGaGCU---------ACG-CCGGUGGC--CGG- -5'
7170 3' -61.6 NC_001900.1 + 4135 0.66 0.321766
Target:  5'- --uCUGCCgaccggCGAaGCGGCCGgCGGUg -3'
miRNA:   3'- aacGACGGa-----GCUaCGCCGGUgGCCGg -5'
7170 3' -61.6 NC_001900.1 + 3013 0.66 0.321766
Target:  5'- cUGCUGCUgacCGAa--GGCgACCGGCg -3'
miRNA:   3'- aACGACGGa--GCUacgCCGgUGGCCGg -5'
7170 3' -61.6 NC_001900.1 + 26447 0.66 0.31411
Target:  5'- cUUGCUGCCaugCGAaacaGGCUACCGGa- -3'
miRNA:   3'- -AACGACGGa--GCUacg-CCGGUGGCCgg -5'
7170 3' -61.6 NC_001900.1 + 18242 0.66 0.31411
Target:  5'- -aGCUGgUUCGAUGacgcaGGCUcCUGGCUg -3'
miRNA:   3'- aaCGACgGAGCUACg----CCGGuGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 30377 0.67 0.306593
Target:  5'- cUGC-GCCUUGAucuggucgagcUGCGccugcagcGCCGCaCGGCCg -3'
miRNA:   3'- aACGaCGGAGCU-----------ACGC--------CGGUG-GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 15756 0.67 0.299215
Target:  5'- ----aGaCCguggaGGUGCGGCCugcGCCGGCCg -3'
miRNA:   3'- aacgaC-GGag---CUACGCCGG---UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 43751 0.67 0.291974
Target:  5'- gUGCagucgGCCUgGAUGaGGCCgucacGCaCGGCCg -3'
miRNA:   3'- aACGa----CGGAgCUACgCCGG-----UG-GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 2617 0.67 0.291974
Target:  5'- -gGaCUGCUcaCGGUGCGGCCAUgaGGCg -3'
miRNA:   3'- aaC-GACGGa-GCUACGCCGGUGg-CCGg -5'
7170 3' -61.6 NC_001900.1 + 3366 0.67 0.289117
Target:  5'- cUGCUgGCCcacgcgaaaggugUGGUGaGGCCgGCCGGCCg -3'
miRNA:   3'- aACGA-CGGa------------GCUACgCCGG-UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 25655 0.67 0.284872
Target:  5'- gUGCUcgcggaucaucGCCgCGAcgugagGCGGCacgguCACCGGCCg -3'
miRNA:   3'- aACGA-----------CGGaGCUa-----CGCCG-----GUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.