Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 47441 | 0.75 | 0.080989 |
Target: 5'- -cGCUGaCCgggGGUGUcGCCACCGGCCg -3' miRNA: 3'- aaCGAC-GGag-CUACGcCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 45541 | 0.69 | 0.204658 |
Target: 5'- -cGCcGCgUCGAUgGCGuccuggauGUCACCGGCCa -3' miRNA: 3'- aaCGaCGgAGCUA-CGC--------CGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 43751 | 0.67 | 0.291974 |
Target: 5'- gUGCagucgGCCUgGAUGaGGCCgucacGCaCGGCCg -3' miRNA: 3'- aACGa----CGGAgCUACgCCGG-----UG-GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 42955 | 0.68 | 0.263722 |
Target: 5'- -gGCUGCCUCGAucUG-GGCCAgcacguuCCGaGCg -3' miRNA: 3'- aaCGACGGAGCU--ACgCCGGU-------GGC-CGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 42906 | 0.66 | 0.337493 |
Target: 5'- -cGUUGCUcgCGGUGUGGUCGCCGa-- -3' miRNA: 3'- aaCGACGGa-GCUACGCCGGUGGCcgg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 42741 | 0.68 | 0.2514 |
Target: 5'- -aGCgGCCguggcCGGUGCGGCUgcGCCGaCCa -3' miRNA: 3'- aaCGaCGGa----GCUACGCCGG--UGGCcGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 41761 | 0.66 | 0.353772 |
Target: 5'- -gGUUGUagaGGUGCGGCCACUuGUCg -3' miRNA: 3'- aaCGACGgagCUACGCCGGUGGcCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 41099 | 1.09 | 0.000168 |
Target: 5'- gUUGCUGCCUCGAUGCGGCCACCGGCCg -3' miRNA: 3'- -AACGACGGAGCUACGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 40967 | 0.73 | 0.110078 |
Target: 5'- aUGUUGCCUuCGAUGaccuCGGCCAUCgcguGGCCu -3' miRNA: 3'- aACGACGGA-GCUAC----GCCGGUGG----CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 39921 | 0.68 | 0.238946 |
Target: 5'- -gGCUGUCaUCGGa-CGGCCAccacCCGGCCc -3' miRNA: 3'- aaCGACGG-AGCUacGCCGGU----GGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 39605 | 0.67 | 0.284169 |
Target: 5'- -aGCgggGCCUCGAUGuCGagguuguucgccuGCCACCacuGCCa -3' miRNA: 3'- aaCGa--CGGAGCUAC-GC-------------CGGUGGc--CGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 37766 | 0.68 | 0.238337 |
Target: 5'- -aGCUGCagagCGcguuccuGUGCGGCCuuuCCgGGCCa -3' miRNA: 3'- aaCGACGga--GC-------UACGCCGGu--GG-CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 35702 | 0.66 | 0.352945 |
Target: 5'- -cGCUGgacgaugaCCUUGGUGCccuucuucacgucGGCCuccGCUGGCCg -3' miRNA: 3'- aaCGAC--------GGAGCUACG-------------CCGG---UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 34800 | 0.66 | 0.32956 |
Target: 5'- cUGCUcGCCUUc--GCgGGCaCACCGGCUc -3' miRNA: 3'- aACGA-CGGAGcuaCG-CCG-GUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33934 | 0.7 | 0.189166 |
Target: 5'- -aGCgUGCCUCGGcuggUGUGGCCgacgcucgaccaGCCGGUg -3' miRNA: 3'- aaCG-ACGGAGCU----ACGCCGG------------UGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33778 | 0.7 | 0.179419 |
Target: 5'- -gGC-GUCUCGGccgaaccgUGCGGCCA-CGGCCu -3' miRNA: 3'- aaCGaCGGAGCU--------ACGCCGGUgGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33032 | 0.66 | 0.321766 |
Target: 5'- cUGCggaGCC-CGAgacuggugcUGCuGGCCACCGccGCCg -3' miRNA: 3'- aACGa--CGGaGCU---------ACG-CCGGUGGC--CGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 32063 | 0.66 | 0.337493 |
Target: 5'- cUGCcGCCUUGAUGCcguccauGCCgagugcgaccacACCGGCUc -3' miRNA: 3'- aACGaCGGAGCUACGc------CGG------------UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 32032 | 0.67 | 0.284872 |
Target: 5'- -cGUUGagcaCCUUGGUaGCGGCCGuuGGCg -3' miRNA: 3'- aaCGAC----GGAGCUA-CGCCGGUggCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 30377 | 0.67 | 0.306593 |
Target: 5'- cUGC-GCCUUGAucuggucgagcUGCGccugcagcGCCGCaCGGCCg -3' miRNA: 3'- aACGaCGGAGCU-----------ACGC--------CGGUG-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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