miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7170 3' -61.6 NC_001900.1 + 148 0.72 0.126323
Target:  5'- gUGCUGaCCUgcgaCGAUGCGaaUGCCGGCCu -3'
miRNA:   3'- aACGAC-GGA----GCUACGCcgGUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 42741 0.68 0.2514
Target:  5'- -aGCgGCCguggcCGGUGCGGCUgcGCCGaCCa -3'
miRNA:   3'- aaCGaCGGa----GCUACGCCGG--UGGCcGG- -5'
7170 3' -61.6 NC_001900.1 + 39921 0.68 0.238946
Target:  5'- -gGCUGUCaUCGGa-CGGCCAccacCCGGCCc -3'
miRNA:   3'- aaCGACGG-AGCUacGCCGGU----GGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 37766 0.68 0.238337
Target:  5'- -aGCUGCagagCGcguuccuGUGCGGCCuuuCCgGGCCa -3'
miRNA:   3'- aaCGACGga--GC-------UACGCCGGu--GG-CCGG- -5'
7170 3' -61.6 NC_001900.1 + 45541 0.69 0.204658
Target:  5'- -cGCcGCgUCGAUgGCGuccuggauGUCACCGGCCa -3'
miRNA:   3'- aaCGaCGgAGCUA-CGC--------CGGUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 33934 0.7 0.189166
Target:  5'- -aGCgUGCCUCGGcuggUGUGGCCgacgcucgaccaGCCGGUg -3'
miRNA:   3'- aaCG-ACGGAGCU----ACGCCGG------------UGGCCGg -5'
7170 3' -61.6 NC_001900.1 + 27898 0.7 0.184236
Target:  5'- gUUGaUGCC-CGGaGCGGacuguCCACCGGCCa -3'
miRNA:   3'- -AACgACGGaGCUaCGCC-----GGUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 26964 0.7 0.174715
Target:  5'- -cGCUGCgUUGuucAUGuCGuGCCGCUGGCCu -3'
miRNA:   3'- aaCGACGgAGC---UAC-GC-CGGUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 8739 0.71 0.156981
Target:  5'- ----cGCaCUCGAcGCGGCCAaccaCGGCCg -3'
miRNA:   3'- aacgaCG-GAGCUaCGCCGGUg---GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 8934 0.68 0.2514
Target:  5'- --cCUGCUg-GAcGCGGCUGCUGGCCa -3'
miRNA:   3'- aacGACGGagCUaCGCCGGUGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 42955 0.68 0.263722
Target:  5'- -gGCUGCCUCGAucUG-GGCCAgcacguuCCGaGCg -3'
miRNA:   3'- aaCGACGGAGCU--ACgCCGGU-------GGC-CGg -5'
7170 3' -61.6 NC_001900.1 + 17445 0.67 0.277906
Target:  5'- -aGCUugGCUcCGGU-CGGCCcgaACCGGCCg -3'
miRNA:   3'- aaCGA--CGGaGCUAcGCCGG---UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 4336 0.66 0.343939
Target:  5'- -aGCUcGCUcggaUCGAcaagguguggcaGCGGCCAgCGGCCu -3'
miRNA:   3'- aaCGA-CGG----AGCUa-----------CGCCGGUgGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 32063 0.66 0.337493
Target:  5'- cUGCcGCCUUGAUGCcguccauGCCgagugcgaccacACCGGCUc -3'
miRNA:   3'- aACGaCGGAGCUACGc------CGG------------UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 30377 0.67 0.306593
Target:  5'- cUGC-GCCUUGAucuggucgagcUGCGccugcagcGCCGCaCGGCCg -3'
miRNA:   3'- aACGaCGGAGCU-----------ACGC--------CGGUG-GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 15756 0.67 0.299215
Target:  5'- ----aGaCCguggaGGUGCGGCCugcGCCGGCCg -3'
miRNA:   3'- aacgaC-GGag---CUACGCCGG---UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 43751 0.67 0.291974
Target:  5'- gUGCagucgGCCUgGAUGaGGCCgucacGCaCGGCCg -3'
miRNA:   3'- aACGa----CGGAgCUACgCCGG-----UG-GCCGG- -5'
7170 3' -61.6 NC_001900.1 + 2617 0.67 0.291974
Target:  5'- -gGaCUGCUcaCGGUGCGGCCAUgaGGCg -3'
miRNA:   3'- aaC-GACGGa-GCUACGCCGGUGg-CCGg -5'
7170 3' -61.6 NC_001900.1 + 3366 0.67 0.289117
Target:  5'- cUGCUgGCCcacgcgaaaggugUGGUGaGGCCgGCCGGCCg -3'
miRNA:   3'- aACGA-CGGa------------GCUACgCCGG-UGGCCGG- -5'
7170 3' -61.6 NC_001900.1 + 39605 0.67 0.284169
Target:  5'- -aGCgggGCCUCGAUGuCGagguuguucgccuGCCACCacuGCCa -3'
miRNA:   3'- aaCGa--CGGAGCUAC-GC-------------CGGUGGc--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.