Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 42955 | 0.68 | 0.263722 |
Target: 5'- -gGCUGCCUCGAucUG-GGCCAgcacguuCCGaGCg -3' miRNA: 3'- aaCGACGGAGCU--ACgCCGGU-------GGC-CGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 17445 | 0.67 | 0.277906 |
Target: 5'- -aGCUugGCUcCGGU-CGGCCcgaACCGGCCg -3' miRNA: 3'- aaCGA--CGGaGCUAcGCCGG---UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 39605 | 0.67 | 0.284169 |
Target: 5'- -aGCgggGCCUCGAUGuCGagguuguucgccuGCCACCacuGCCa -3' miRNA: 3'- aaCGa--CGGAGCUAC-GC-------------CGGUGGc--CGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 25655 | 0.67 | 0.284872 |
Target: 5'- gUGCUcgcggaucaucGCCgCGAcgugagGCGGCacgguCACCGGCCg -3' miRNA: 3'- aACGA-----------CGGaGCUa-----CGCCG-----GUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 32032 | 0.67 | 0.284872 |
Target: 5'- -cGUUGagcaCCUUGGUaGCGGCCGuuGGCg -3' miRNA: 3'- aaCGAC----GGAGCUA-CGCCGGUggCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 3366 | 0.67 | 0.289117 |
Target: 5'- cUGCUgGCCcacgcgaaaggugUGGUGaGGCCgGCCGGCCg -3' miRNA: 3'- aACGA-CGGa------------GCUACgCCGG-UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 43751 | 0.67 | 0.291974 |
Target: 5'- gUGCagucgGCCUgGAUGaGGCCgucacGCaCGGCCg -3' miRNA: 3'- aACGa----CGGAgCUACgCCGG-----UG-GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 2617 | 0.67 | 0.291974 |
Target: 5'- -gGaCUGCUcaCGGUGCGGCCAUgaGGCg -3' miRNA: 3'- aaC-GACGGa-GCUACGCCGGUGg-CCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 15756 | 0.67 | 0.299215 |
Target: 5'- ----aGaCCguggaGGUGCGGCCugcGCCGGCCg -3' miRNA: 3'- aacgaC-GGag---CUACGCCGG---UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 30377 | 0.67 | 0.306593 |
Target: 5'- cUGC-GCCUUGAucuggucgagcUGCGccugcagcGCCGCaCGGCCg -3' miRNA: 3'- aACGaCGGAGCU-----------ACGC--------CGGUG-GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 26447 | 0.66 | 0.31411 |
Target: 5'- cUUGCUGCCaugCGAaacaGGCUACCGGa- -3' miRNA: 3'- -AACGACGGa--GCUacg-CCGGUGGCCgg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 18242 | 0.66 | 0.31411 |
Target: 5'- -aGCUGgUUCGAUGacgcaGGCUcCUGGCUg -3' miRNA: 3'- aaCGACgGAGCUACg----CCGGuGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 3013 | 0.66 | 0.321766 |
Target: 5'- cUGCUGCUgacCGAa--GGCgACCGGCg -3' miRNA: 3'- aACGACGGa--GCUacgCCGgUGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 4135 | 0.66 | 0.321766 |
Target: 5'- --uCUGCCgaccggCGAaGCGGCCGgCGGUg -3' miRNA: 3'- aacGACGGa-----GCUaCGCCGGUgGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33032 | 0.66 | 0.321766 |
Target: 5'- cUGCggaGCC-CGAgacuggugcUGCuGGCCACCGccGCCg -3' miRNA: 3'- aACGa--CGGaGCU---------ACG-CCGGUGGC--CGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 34800 | 0.66 | 0.32956 |
Target: 5'- cUGCUcGCCUUc--GCgGGCaCACCGGCUc -3' miRNA: 3'- aACGA-CGGAGcuaCG-CCG-GUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 15261 | 0.66 | 0.32956 |
Target: 5'- cUGCUGCaccaguUCGAUgaGCaGUCGCuCGGCCu -3' miRNA: 3'- aACGACGg-----AGCUA--CGcCGGUG-GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 32063 | 0.66 | 0.337493 |
Target: 5'- cUGCcGCCUUGAUGCcguccauGCCgagugcgaccacACCGGCUc -3' miRNA: 3'- aACGaCGGAGCUACGc------CGG------------UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 27478 | 0.66 | 0.337493 |
Target: 5'- -cGCacgGCCUUGAgcCGGCCGUCGGCg -3' miRNA: 3'- aaCGa--CGGAGCUacGCCGGUGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 42906 | 0.66 | 0.337493 |
Target: 5'- -cGUUGCUcgCGGUGUGGUCGCCGa-- -3' miRNA: 3'- aaCGACGGa-GCUACGCCGGUGGCcgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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