Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 27511 | 0.66 | 0.913585 |
Target: 5'- gUACGGug---CcGCGUCAGACACCu -3' miRNA: 3'- gGUGCCcuuuaGuCGUAGUCUGUGGu -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 3761 | 0.66 | 0.913585 |
Target: 5'- cUCGCGGcgcucguucgauGAGGUCGGCGUCGu-CACCu -3' miRNA: 3'- -GGUGCC------------CUUUAGUCGUAGUcuGUGGu -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 12068 | 0.66 | 0.913585 |
Target: 5'- aCAa-GGAGAUUAGCAgauggccgCAGGCACUg -3' miRNA: 3'- gGUgcCCUUUAGUCGUa-------GUCUGUGGu -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 30010 | 0.66 | 0.912927 |
Target: 5'- aCGCGGG----CAGCGUCugcgccgGGAUGCCAg -3' miRNA: 3'- gGUGCCCuuuaGUCGUAG-------UCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 39994 | 0.66 | 0.906867 |
Target: 5'- aCGCGaGGA---CAGCG-CAGACugCAg -3' miRNA: 3'- gGUGC-CCUuuaGUCGUaGUCUGugGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 16878 | 0.66 | 0.906867 |
Target: 5'- -aGCGuGGA--UCGGCGUCGGGaucguCGCCAu -3' miRNA: 3'- ggUGC-CCUuuAGUCGUAGUCU-----GUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 19850 | 0.66 | 0.906867 |
Target: 5'- aCGCGaGGAgcaGAUCAGCuccgaGUCGGGCuccCCGg -3' miRNA: 3'- gGUGC-CCU---UUAGUCG-----UAGUCUGu--GGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 45321 | 0.66 | 0.902695 |
Target: 5'- gCCGCGaggucaccuugagcuGGAAGUUcagGGUGUCGGugACCGu -3' miRNA: 3'- -GGUGC---------------CCUUUAG---UCGUAGUCugUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 18709 | 0.66 | 0.899855 |
Target: 5'- gCugGGGGAG-CAGCAggUCugGGAgGCCGu -3' miRNA: 3'- gGugCCCUUUaGUCGU--AG--UCUgUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 8196 | 0.66 | 0.899138 |
Target: 5'- ---aGGGAGAUCugauGCGUCGGGuacugauCACCGg -3' miRNA: 3'- ggugCCCUUUAGu---CGUAGUCU-------GUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 29394 | 0.66 | 0.877107 |
Target: 5'- gCCAgGGGAAGUCAGgGaucuucUCGGuggaGCCGg -3' miRNA: 3'- -GGUgCCCUUUAGUCgU------AGUCug--UGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 34831 | 0.66 | 0.877107 |
Target: 5'- aUCuCGGaGAccucGGUCAGCAUCuucgccagAGGCACCGg -3' miRNA: 3'- -GGuGCC-CU----UUAGUCGUAG--------UCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 31500 | 0.67 | 0.851912 |
Target: 5'- aCACc-GAAGUCAGCG-CGGGCAUCAg -3' miRNA: 3'- gGUGccCUUUAGUCGUaGUCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 34921 | 0.67 | 0.851912 |
Target: 5'- aCGCGGGA---CAGUcgUAGACGCg- -3' miRNA: 3'- gGUGCCCUuuaGUCGuaGUCUGUGgu -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 21719 | 0.67 | 0.843006 |
Target: 5'- gCCGuuGGAGAUCGagAUCGGAUACCGc -3' miRNA: 3'- -GGUgcCCUUUAGUcgUAGUCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 29349 | 0.68 | 0.824488 |
Target: 5'- uCCAacuuCGGGGucggugccGAUCAGCAcCGGAC-CCAu -3' miRNA: 3'- -GGU----GCCCU--------UUAGUCGUaGUCUGuGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 31349 | 0.68 | 0.824488 |
Target: 5'- aCCACGG----UCAGCA-CAGGCcCCAg -3' miRNA: 3'- -GGUGCCcuuuAGUCGUaGUCUGuGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 15111 | 0.68 | 0.814896 |
Target: 5'- gCCACcGGcuGGUCgAGCGUCGGccACACCAg -3' miRNA: 3'- -GGUGcCCu-UUAG-UCGUAGUC--UGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 29152 | 0.68 | 0.795105 |
Target: 5'- gUACGGGggGaUCAuguuGCGgaacCGGACACCGu -3' miRNA: 3'- gGUGCCCuuU-AGU----CGUa---GUCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 45492 | 0.7 | 0.675845 |
Target: 5'- aCGCGGGGAA-CAGCGagacCGGauGCACCAg -3' miRNA: 3'- gGUGCCCUUUaGUCGUa---GUC--UGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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