Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 27511 | 0.66 | 0.913585 |
Target: 5'- gUACGGug---CcGCGUCAGACACCu -3' miRNA: 3'- gGUGCCcuuuaGuCGUAGUCUGUGGu -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 37980 | 1.11 | 0.001708 |
Target: 5'- gCCACGGGAAAUCAGCAUCAGACACCAg -3' miRNA: 3'- -GGUGCCCUUUAGUCGUAGUCUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 5911 | 0.77 | 0.340996 |
Target: 5'- uCCugGGGGAcAUCAGC-UCAGGCGgCAc -3' miRNA: 3'- -GGugCCCUU-UAGUCGuAGUCUGUgGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 31118 | 0.73 | 0.528737 |
Target: 5'- aUCGCGGG-GAUCAGCGUCuGGaACGCUg -3' miRNA: 3'- -GGUGCCCuUUAGUCGUAG-UC-UGUGGu -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 45492 | 0.7 | 0.675845 |
Target: 5'- aCGCGGGGAA-CAGCGagacCGGauGCACCAg -3' miRNA: 3'- gGUGCCCUUUaGUCGUa---GUC--UGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 29152 | 0.68 | 0.795105 |
Target: 5'- gUACGGGggGaUCAuguuGCGgaacCGGACACCGu -3' miRNA: 3'- gGUGCCCuuU-AGU----CGUa---GUCUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 31349 | 0.68 | 0.824488 |
Target: 5'- aCCACGG----UCAGCA-CAGGCcCCAg -3' miRNA: 3'- -GGUGCCcuuuAGUCGUaGUCUGuGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 31500 | 0.67 | 0.851912 |
Target: 5'- aCACc-GAAGUCAGCG-CGGGCAUCAg -3' miRNA: 3'- gGUGccCUUUAGUCGUaGUCUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 29394 | 0.66 | 0.877107 |
Target: 5'- gCCAgGGGAAGUCAGgGaucuucUCGGuggaGCCGg -3' miRNA: 3'- -GGUgCCCUUUAGUCgU------AGUCug--UGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 8196 | 0.66 | 0.899138 |
Target: 5'- ---aGGGAGAUCugauGCGUCGGGuacugauCACCGg -3' miRNA: 3'- ggugCCCUUUAGu---CGUAGUCU-------GUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 18709 | 0.66 | 0.899855 |
Target: 5'- gCugGGGGAG-CAGCAggUCugGGAgGCCGu -3' miRNA: 3'- gGugCCCUUUaGUCGU--AG--UCUgUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 45321 | 0.66 | 0.902695 |
Target: 5'- gCCGCGaggucaccuugagcuGGAAGUUcagGGUGUCGGugACCGu -3' miRNA: 3'- -GGUGC---------------CCUUUAG---UCGUAGUCugUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 39994 | 0.66 | 0.906867 |
Target: 5'- aCGCGaGGA---CAGCG-CAGACugCAg -3' miRNA: 3'- gGUGC-CCUuuaGUCGUaGUCUGugGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 21719 | 0.67 | 0.843006 |
Target: 5'- gCCGuuGGAGAUCGagAUCGGAUACCGc -3' miRNA: 3'- -GGUgcCCUUUAGUcgUAGUCUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 29349 | 0.68 | 0.824488 |
Target: 5'- uCCAacuuCGGGGucggugccGAUCAGCAcCGGAC-CCAu -3' miRNA: 3'- -GGU----GCCCU--------UUAGUCGUaGUCUGuGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 15111 | 0.68 | 0.814896 |
Target: 5'- gCCACcGGcuGGUCgAGCGUCGGccACACCAg -3' miRNA: 3'- -GGUGcCCu-UUAG-UCGUAGUC--UGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 3954 | 0.71 | 0.653091 |
Target: 5'- uCCACGGcGAAcgCGGCcgGUCucacGGGCACCu -3' miRNA: 3'- -GGUGCC-CUUuaGUCG--UAG----UCUGUGGu -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 19816 | 0.72 | 0.596037 |
Target: 5'- uCUACGGcGAGAaCuGCAUCAucGACACCGa -3' miRNA: 3'- -GGUGCC-CUUUaGuCGUAGU--CUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 29016 | 0.76 | 0.376361 |
Target: 5'- aCCuuCGGGGAcAUCGGCGgugUAGACGCCGa -3' miRNA: 3'- -GGu-GCCCUU-UAGUCGUa--GUCUGUGGU- -5' |
|||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 3761 | 0.66 | 0.913585 |
Target: 5'- cUCGCGGcgcucguucgauGAGGUCGGCGUCGu-CACCu -3' miRNA: 3'- -GGUGCC------------CUUUAGUCGUAGUcuGUGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home