miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
7175	3'	-50.9	NC_001900.1	+	29349	0.68	0.824488
	Target:  5'- uCCAacuuCGGGGucggugccGAUCAGCAcCGGAC-CCAu -3' miRNA:   3'- -GGU----GCCCU--------UUAGUCGUaGUCUGuGGU- -5'
7175	3'	-50.9	NC_001900.1	+	15111	0.68	0.814896
	Target:  5'- gCCACcGGcuGGUCgAGCGUCGGccACACCAg -3' miRNA:   3'- -GGUGcCCu-UUAG-UCGUAGUC--UGUGGU- -5'
7175	3'	-50.9	NC_001900.1	+	3954	0.71	0.653091
	Target:  5'- uCCACGGcGAAcgCGGCcgGUCucacGGGCACCu -3' miRNA:   3'- -GGUGCC-CUUuaGUCG--UAG----UCUGUGGu -5'
7175	3'	-50.9	NC_001900.1	+	19816	0.72	0.596037
	Target:  5'- uCUACGGcGAGAaCuGCAUCAucGACACCGa -3' miRNA:   3'- -GGUGCC-CUUUaGuCGUAGU--CUGUGGU- -5'
7175	3'	-50.9	NC_001900.1	+	29016	0.76	0.376361
	Target:  5'- aCCuuCGGGGAcAUCGGCGgugUAGACGCCGa -3' miRNA:   3'- -GGu-GCCCUU-UAGUCGUa--GUCUGUGGU- -5'
7175	3'	-50.9	NC_001900.1	+	14071	0.77	0.31609
	Target:  5'- gCACGGGAuccUCGGCGcUCAGAC-CCAg -3' miRNA:   3'- gGUGCCCUuu-AGUCGU-AGUCUGuGGU- -5'
7175	3'	-50.9	NC_001900.1	+	3761	0.66	0.913585
	Target:  5'- cUCGCGGcgcucguucgauGAGGUCGGCGUCGu-CACCu -3' miRNA:   3'- -GGUGCC------------CUUUAGUCGUAGUcuGUGGu -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home