Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7175 | 3' | -50.9 | NC_001900.1 | + | 31500 | 0.67 | 0.851912 |
Target: 5'- aCACc-GAAGUCAGCG-CGGGCAUCAg -3' miRNA: 3'- gGUGccCUUUAGUCGUaGUCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 34831 | 0.66 | 0.877107 |
Target: 5'- aUCuCGGaGAccucGGUCAGCAUCuucgccagAGGCACCGg -3' miRNA: 3'- -GGuGCC-CU----UUAGUCGUAG--------UCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 34921 | 0.67 | 0.851912 |
Target: 5'- aCGCGGGA---CAGUcgUAGACGCg- -3' miRNA: 3'- gGUGCCCUuuaGUCGuaGUCUGUGgu -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 37980 | 1.11 | 0.001708 |
Target: 5'- gCCACGGGAAAUCAGCAUCAGACACCAg -3' miRNA: 3'- -GGUGCCCUUUAGUCGUAGUCUGUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 39994 | 0.66 | 0.906867 |
Target: 5'- aCGCGaGGA---CAGCG-CAGACugCAg -3' miRNA: 3'- gGUGC-CCUuuaGUCGUaGUCUGugGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 45321 | 0.66 | 0.902695 |
Target: 5'- gCCGCGaggucaccuugagcuGGAAGUUcagGGUGUCGGugACCGu -3' miRNA: 3'- -GGUGC---------------CCUUUAG---UCGUAGUCugUGGU- -5' |
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7175 | 3' | -50.9 | NC_001900.1 | + | 45492 | 0.7 | 0.675845 |
Target: 5'- aCGCGGGGAA-CAGCGagacCGGauGCACCAg -3' miRNA: 3'- gGUGCCCUUUaGUCGUa---GUC--UGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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