miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7175 3' -50.9 NC_001900.1 + 15111 0.68 0.814896
Target:  5'- gCCACcGGcuGGUCgAGCGUCGGccACACCAg -3'
miRNA:   3'- -GGUGcCCu-UUAG-UCGUAGUC--UGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 14071 0.77 0.31609
Target:  5'- gCACGGGAuccUCGGCGcUCAGAC-CCAg -3'
miRNA:   3'- gGUGCCCUuu-AGUCGU-AGUCUGuGGU- -5'
7175 3' -50.9 NC_001900.1 + 12068 0.66 0.913585
Target:  5'- aCAa-GGAGAUUAGCAgauggccgCAGGCACUg -3'
miRNA:   3'- gGUgcCCUUUAGUCGUa-------GUCUGUGGu -5'
7175 3' -50.9 NC_001900.1 + 8196 0.66 0.899138
Target:  5'- ---aGGGAGAUCugauGCGUCGGGuacugauCACCGg -3'
miRNA:   3'- ggugCCCUUUAGu---CGUAGUCU-------GUGGU- -5'
7175 3' -50.9 NC_001900.1 + 5911 0.77 0.340996
Target:  5'- uCCugGGGGAcAUCAGC-UCAGGCGgCAc -3'
miRNA:   3'- -GGugCCCUU-UAGUCGuAGUCUGUgGU- -5'
7175 3' -50.9 NC_001900.1 + 3954 0.71 0.653091
Target:  5'- uCCACGGcGAAcgCGGCcgGUCucacGGGCACCu -3'
miRNA:   3'- -GGUGCC-CUUuaGUCG--UAG----UCUGUGGu -5'
7175 3' -50.9 NC_001900.1 + 3761 0.66 0.913585
Target:  5'- cUCGCGGcgcucguucgauGAGGUCGGCGUCGu-CACCu -3'
miRNA:   3'- -GGUGCC------------CUUUAGUCGUAGUcuGUGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.