miRNA display CGI


Results 21 - 28 of 28 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7183 3' -55.3 NC_001900.1 + 38996 0.69 0.546329
Target:  5'- gCgUUGGUGaaGUUGGCCAgCUCGGCu -3'
miRNA:   3'- -GgAGCCAUgaCGACUGGUgGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 41847 0.76 0.225097
Target:  5'- cCCUCGGUGaucggacGCUGGCCAagCUCGAUGa -3'
miRNA:   3'- -GGAGCCAUga-----CGACUGGUg-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 42294 0.66 0.73046
Target:  5'- gCUCGau-CUGCagGAUCAgCUCGGCGa -3'
miRNA:   3'- gGAGCcauGACGa-CUGGUgGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 42732 0.66 0.740928
Target:  5'- uCCUCGaUGucGUUGACCAUCUCG-CGg -3'
miRNA:   3'- -GGAGCcAUgaCGACUGGUGGAGCuGC- -5'
7183 3' -55.3 NC_001900.1 + 42945 0.71 0.434292
Target:  5'- aCUCGGg---GUUGGCUGCCUCGAUc -3'
miRNA:   3'- gGAGCCaugaCGACUGGUGGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 43446 0.71 0.442974
Target:  5'- gUCUCGGaucACUGCuUGACCACCcccgcgucauggaUCGGCc -3'
miRNA:   3'- -GGAGCCa--UGACG-ACUGGUGG-------------AGCUGc -5'
7183 3' -55.3 NC_001900.1 + 46921 0.66 0.740928
Target:  5'- cCCUCGGg--UGCguuucGACCGcgagaaagcCCUCGAUGg -3'
miRNA:   3'- -GGAGCCaugACGa----CUGGU---------GGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 48958 0.67 0.676879
Target:  5'- uCCUCGGU--UGCUGggcaucguguGCC-CCUCGAgGc -3'
miRNA:   3'- -GGAGCCAugACGAC----------UGGuGGAGCUgC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.