miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7183 3' -55.3 NC_001900.1 + 42945 0.71 0.434292
Target:  5'- aCUCGGg---GUUGGCUGCCUCGAUc -3'
miRNA:   3'- gGAGCCaugaCGACUGGUGGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 38996 0.69 0.546329
Target:  5'- gCgUUGGUGaaGUUGGCCAgCUCGGCu -3'
miRNA:   3'- -GgAGCCAUgaCGACUGGUgGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 30702 0.68 0.615673
Target:  5'- --cCGGUcacagcguucuucacGCUGCUGGCCAguuCCUUGGCc -3'
miRNA:   3'- ggaGCCA---------------UGACGACUGGU---GGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 9417 0.67 0.644138
Target:  5'- aCC-CGGUGCUGU---UCGCgCUCGACGc -3'
miRNA:   3'- -GGaGCCAUGACGacuGGUG-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 6128 0.67 0.655076
Target:  5'- aCCaacGUGCUGCUGAgCCACUucccguacgUCGGCGa -3'
miRNA:   3'- -GGagcCAUGACGACU-GGUGG---------AGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 14303 0.67 0.655076
Target:  5'- aCggCGGUGC-GCUGACCgguCUCGAUGc -3'
miRNA:   3'- gGa-GCCAUGaCGACUGGug-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 20119 0.66 0.719893
Target:  5'- aCCUgGGUcgGC-GCUGAUgGCCgaCGACGu -3'
miRNA:   3'- -GGAgCCA--UGaCGACUGgUGGa-GCUGC- -5'
7183 3' -55.3 NC_001900.1 + 42294 0.66 0.73046
Target:  5'- gCUCGau-CUGCagGAUCAgCUCGGCGa -3'
miRNA:   3'- gGAGCcauGACGa-CUGGUgGAGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.