miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7184 5' -59.4 NC_001900.1 + 1174 0.69 0.302121
Target:  5'- gCGGCGGUGGAgCCGCCGgaAGC-GGCCgGg -3'
miRNA:   3'- -GCUGUCGCCU-GGUGGC--UCGaCUGGgU- -5'
7184 5' -59.4 NC_001900.1 + 3351 0.7 0.260461
Target:  5'- -cGCAGCGG-CCACguucuGCUGGCCCAc -3'
miRNA:   3'- gcUGUCGCCuGGUGgcu--CGACUGGGU- -5'
7184 5' -59.4 NC_001900.1 + 4495 0.69 0.309543
Target:  5'- aCGACGuUGGAgccuUCACCGAGgaGACCCc -3'
miRNA:   3'- -GCUGUcGCCU----GGUGGCUCgaCUGGGu -5'
7184 5' -59.4 NC_001900.1 + 5573 0.73 0.172067
Target:  5'- gCGGagcaGGCGG-CgCACCGAGCUGGCCg- -3'
miRNA:   3'- -GCUg---UCGCCuG-GUGGCUCGACUGGgu -5'
7184 5' -59.4 NC_001900.1 + 5819 0.73 0.167541
Target:  5'- -aGCGGaGGACCgagACUGGGCUGGCCCGg -3'
miRNA:   3'- gcUGUCgCCUGG---UGGCUCGACUGGGU- -5'
7184 5' -59.4 NC_001900.1 + 6750 0.66 0.456365
Target:  5'- cCGuCGGUcgagaaGGGugUCGCCGAGCUGAUCCu -3'
miRNA:   3'- -GCuGUCG------CCU--GGUGGCUCGACUGGGu -5'
7184 5' -59.4 NC_001900.1 + 6828 0.65 0.493004
Target:  5'- gCGAUGGCGGguuacucgcagggaGCCAUCGuGGUUGGCCa- -3'
miRNA:   3'- -GCUGUCGCC--------------UGGUGGC-UCGACUGGgu -5'
7184 5' -59.4 NC_001900.1 + 6983 0.7 0.253991
Target:  5'- uGACAGUGGAuCCAcCCGGucGCUGcCCCu -3'
miRNA:   3'- gCUGUCGCCU-GGU-GGCU--CGACuGGGu -5'
7184 5' -59.4 NC_001900.1 + 8923 0.68 0.373887
Target:  5'- gCGGCAGCGGuCCuGCUGGacgcggcuGCUGGCCa- -3'
miRNA:   3'- -GCUGUCGCCuGG-UGGCU--------CGACUGGgu -5'
7184 5' -59.4 NC_001900.1 + 10587 0.66 0.446715
Target:  5'- uCGAC-GCGauuACCGCUGAGCUGugCgGg -3'
miRNA:   3'- -GCUGuCGCc--UGGUGGCUCGACugGgU- -5'
7184 5' -59.4 NC_001900.1 + 19319 0.67 0.427762
Target:  5'- aCGGCGGUgGGGCCaacacggugGCCGAGCaGACUgGg -3'
miRNA:   3'- -GCUGUCG-CCUGG---------UGGCUCGaCUGGgU- -5'
7184 5' -59.4 NC_001900.1 + 21587 0.66 0.489982
Target:  5'- cCGACGGCcGGCUcaagGCCGugcggcucggccccaGGCUGAUCCGc -3'
miRNA:   3'- -GCUGUCGcCUGG----UGGC---------------UCGACUGGGU- -5'
7184 5' -59.4 NC_001900.1 + 22876 0.71 0.21791
Target:  5'- aGA-AGUGGAUCGCCGAGCgaGACCUc -3'
miRNA:   3'- gCUgUCGCCUGGUGGCUCGa-CUGGGu -5'
7184 5' -59.4 NC_001900.1 + 22962 0.66 0.485966
Target:  5'- gCGACAcccCGG-UCGCCGAGaUGACCCc -3'
miRNA:   3'- -GCUGUc--GCCuGGUGGCUCgACUGGGu -5'
7184 5' -59.4 NC_001900.1 + 23178 0.66 0.475995
Target:  5'- cCGGCcgAGCaGAUCGgUGAGCUGGCCg- -3'
miRNA:   3'- -GCUG--UCGcCUGGUgGCUCGACUGGgu -5'
7184 5' -59.4 NC_001900.1 + 23313 0.66 0.475995
Target:  5'- aCGGCGGUcGGCC-CCG-GCUGGgCCGa -3'
miRNA:   3'- -GCUGUCGcCUGGuGGCuCGACUgGGU- -5'
7184 5' -59.4 NC_001900.1 + 24896 0.67 0.409293
Target:  5'- cCGACA-UGGugUACCGAGaccgGACCUAc -3'
miRNA:   3'- -GCUGUcGCCugGUGGCUCga--CUGGGU- -5'
7184 5' -59.4 NC_001900.1 + 25916 0.69 0.309543
Target:  5'- aCGACGGUcuGGuCCucgcCCGGGCUGcGCCCGu -3'
miRNA:   3'- -GCUGUCG--CCuGGu---GGCUCGAC-UGGGU- -5'
7184 5' -59.4 NC_001900.1 + 26245 0.68 0.382542
Target:  5'- -aACAGCGGACCuucGCUGAGCgcgUCCAu -3'
miRNA:   3'- gcUGUCGCCUGG---UGGCUCGacuGGGU- -5'
7184 5' -59.4 NC_001900.1 + 28003 0.73 0.172067
Target:  5'- aCGACGuGCGGAgCCcUCGGGCUGguGCCCAg -3'
miRNA:   3'- -GCUGU-CGCCU-GGuGGCUCGAC--UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.