Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 6983 | 0.7 | 0.253991 |
Target: 5'- uGACAGUGGAuCCAcCCGGucGCUGcCCCu -3' miRNA: 3'- gCUGUCGCCU-GGU-GGCU--CGACuGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 28034 | 0.66 | 0.475995 |
Target: 5'- cCGGguGCGGagccGCCACCGucacaGGCcgugaGGCCCAg -3' miRNA: 3'- -GCUguCGCC----UGGUGGC-----UCGa----CUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23313 | 0.66 | 0.475995 |
Target: 5'- aCGGCGGUcGGCC-CCG-GCUGGgCCGa -3' miRNA: 3'- -GCUGUCGcCUGGuGGCuCGACUgGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 6750 | 0.66 | 0.456365 |
Target: 5'- cCGuCGGUcgagaaGGGugUCGCCGAGCUGAUCCu -3' miRNA: 3'- -GCuGUCG------CCU--GGUGGCUCGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 24896 | 0.67 | 0.409293 |
Target: 5'- cCGACA-UGGugUACCGAGaccgGACCUAc -3' miRNA: 3'- -GCUGUcGCCugGUGGCUCga--CUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 29580 | 0.74 | 0.14648 |
Target: 5'- cCGAgAGCGGuCCACCGGcagccGCcGGCCCAu -3' miRNA: 3'- -GCUgUCGCCuGGUGGCU-----CGaCUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 6828 | 0.65 | 0.493004 |
Target: 5'- gCGAUGGCGGguuacucgcagggaGCCAUCGuGGUUGGCCa- -3' miRNA: 3'- -GCUGUCGCC--------------UGGUGGC-UCGACUGGgu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36676 | 0.66 | 0.466127 |
Target: 5'- aGACcucaCGGACCucGCUgGAGCUGAUCCGc -3' miRNA: 3'- gCUGuc--GCCUGG--UGG-CUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 47252 | 0.67 | 0.400247 |
Target: 5'- aCGGCuuuGCGGACCuucuCC-AGCUuGCCCGc -3' miRNA: 3'- -GCUGu--CGCCUGGu---GGcUCGAcUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 1174 | 0.69 | 0.302121 |
Target: 5'- gCGGCGGUGGAgCCGCCGgaAGC-GGCCgGg -3' miRNA: 3'- -GCUGUCGCCU-GGUGGC--UCGaCUGGgU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 32817 | 0.68 | 0.34873 |
Target: 5'- uGugAGgGGGCCAgUCGucguuGCUGGCCCc -3' miRNA: 3'- gCugUCgCCUGGU-GGCu----CGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23178 | 0.66 | 0.475995 |
Target: 5'- cCGGCcgAGCaGAUCGgUGAGCUGGCCg- -3' miRNA: 3'- -GCUG--UCGcCUGGUgGCUCGACUGGgu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 31560 | 1.08 | 0.000439 |
Target: 5'- uCGACAGCGGACCACCGAGCUGACCCAu -3' miRNA: 3'- -GCUGUCGCCUGGUGGCUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36224 | 0.66 | 0.446715 |
Target: 5'- uCGAaGGaCaGACCGCCGAuCUGGCCCc -3' miRNA: 3'- -GCUgUC-GcCUGGUGGCUcGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 42416 | 0.71 | 0.21791 |
Target: 5'- uCGGCAgGCaGGCCAggcccgaggggaUCGGGCUGGCCCGu -3' miRNA: 3'- -GCUGU-CGcCUGGU------------GGCUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 48180 | 0.71 | 0.223604 |
Target: 5'- uCGACcuucgaggAGCGGAugcCCAUCGAGCUGAUCgCGa -3' miRNA: 3'- -GCUG--------UCGCCU---GGUGGCUCGACUGG-GU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 3351 | 0.7 | 0.260461 |
Target: 5'- -cGCAGCGG-CCACguucuGCUGGCCCAc -3' miRNA: 3'- gcUGUCGCCuGGUGgcu--CGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 47532 | 0.69 | 0.294835 |
Target: 5'- -uGCGGUGGACCACCuGcGCcUGGCUCAg -3' miRNA: 3'- gcUGUCGCCUGGUGG-CuCG-ACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 19319 | 0.67 | 0.427762 |
Target: 5'- aCGGCGGUgGGGCCaacacggugGCCGAGCaGACUgGg -3' miRNA: 3'- -GCUGUCG-CCUGG---------UGGCUCGaCUGGgU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 33247 | 0.67 | 0.426827 |
Target: 5'- uGACGGCcucGACCACggcuucgCGGGCcuucUGGCCCAg -3' miRNA: 3'- gCUGUCGc--CUGGUG-------GCUCG----ACUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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