Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 42593 | 0.67 | 0.43718 |
Target: 5'- uGACAGCGGACU-CCaGAGCcugcuUGACgCGc -3' miRNA: 3'- gCUGUCGCCUGGuGG-CUCG-----ACUGgGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 19319 | 0.67 | 0.427762 |
Target: 5'- aCGGCGGUgGGGCCaacacggugGCCGAGCaGACUgGg -3' miRNA: 3'- -GCUGUCG-CCUGG---------UGGCUCGaCUGGgU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 33247 | 0.67 | 0.426827 |
Target: 5'- uGACGGCcucGACCACggcuucgCGGGCcuucUGGCCCAg -3' miRNA: 3'- gCUGUCGc--CUGGUG-------GCUCG----ACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 26245 | 0.68 | 0.382542 |
Target: 5'- -aACAGCGGACCuucGCUGAGCgcgUCCAu -3' miRNA: 3'- gcUGUCGCCUGG---UGGCUCGacuGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 8923 | 0.68 | 0.373887 |
Target: 5'- gCGGCAGCGGuCCuGCUGGacgcggcuGCUGGCCa- -3' miRNA: 3'- -GCUGUCGCCuGG-UGGCU--------CGACUGGgu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 4495 | 0.69 | 0.309543 |
Target: 5'- aCGACGuUGGAgccuUCACCGAGgaGACCCc -3' miRNA: 3'- -GCUGUcGCCU----GGUGGCUCgaCUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 25916 | 0.69 | 0.309543 |
Target: 5'- aCGACGGUcuGGuCCucgcCCGGGCUGcGCCCGu -3' miRNA: 3'- -GCUGUCG--CCuGGu---GGCUCGAC-UGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 47532 | 0.69 | 0.294835 |
Target: 5'- -uGCGGUGGACCACCuGcGCcUGGCUCAg -3' miRNA: 3'- gcUGUCGCCUGGUGG-CuCG-ACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 3351 | 0.7 | 0.260461 |
Target: 5'- -cGCAGCGG-CCACguucuGCUGGCCCAc -3' miRNA: 3'- gcUGUCGCCuGGUGgcu--CGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 48180 | 0.71 | 0.223604 |
Target: 5'- uCGACcuucgaggAGCGGAugcCCAUCGAGCUGAUCgCGa -3' miRNA: 3'- -GCUG--------UCGCCU---GGUGGCUCGACUGG-GU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 42416 | 0.71 | 0.21791 |
Target: 5'- uCGGCAgGCaGGCCAggcccgaggggaUCGGGCUGGCCCGu -3' miRNA: 3'- -GCUGU-CGcCUGGU------------GGCUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 21587 | 0.66 | 0.489982 |
Target: 5'- cCGACGGCcGGCUcaagGCCGugcggcucggccccaGGCUGAUCCGc -3' miRNA: 3'- -GCUGUCGcCUGG----UGGC---------------UCGACUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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