Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 19319 | 0.67 | 0.427762 |
Target: 5'- aCGGCGGUgGGGCCaacacggugGCCGAGCaGACUgGg -3' miRNA: 3'- -GCUGUCG-CCUGG---------UGGCUCGaCUGGgU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 42593 | 0.67 | 0.43718 |
Target: 5'- uGACAGCGGACU-CCaGAGCcugcuUGACgCGc -3' miRNA: 3'- gCUGUCGCCUGGuGG-CUCG-----ACUGgGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36224 | 0.66 | 0.446715 |
Target: 5'- uCGAaGGaCaGACCGCCGAuCUGGCCCc -3' miRNA: 3'- -GCUgUC-GcCUGGUGGCUcGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 10587 | 0.66 | 0.446715 |
Target: 5'- uCGAC-GCGauuACCGCUGAGCUGugCgGg -3' miRNA: 3'- -GCUGuCGCc--UGGUGGCUCGACugGgU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 6750 | 0.66 | 0.456365 |
Target: 5'- cCGuCGGUcgagaaGGGugUCGCCGAGCUGAUCCu -3' miRNA: 3'- -GCuGUCG------CCU--GGUGGCUCGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36676 | 0.66 | 0.466127 |
Target: 5'- aGACcucaCGGACCucGCUgGAGCUGAUCCGc -3' miRNA: 3'- gCUGuc--GCCUGG--UGG-CUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23178 | 0.66 | 0.475995 |
Target: 5'- cCGGCcgAGCaGAUCGgUGAGCUGGCCg- -3' miRNA: 3'- -GCUG--UCGcCUGGUgGCUCGACUGGgu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23313 | 0.66 | 0.475995 |
Target: 5'- aCGGCGGUcGGCC-CCG-GCUGGgCCGa -3' miRNA: 3'- -GCUGUCGcCUGGuGGCuCGACUgGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 28034 | 0.66 | 0.475995 |
Target: 5'- cCGGguGCGGagccGCCACCGucacaGGCcgugaGGCCCAg -3' miRNA: 3'- -GCUguCGCC----UGGUGGC-----UCGa----CUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 22962 | 0.66 | 0.485966 |
Target: 5'- gCGACAcccCGG-UCGCCGAGaUGACCCc -3' miRNA: 3'- -GCUGUc--GCCuGGUGGCUCgACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 21587 | 0.66 | 0.489982 |
Target: 5'- cCGACGGCcGGCUcaagGCCGugcggcucggccccaGGCUGAUCCGc -3' miRNA: 3'- -GCUGUCGcCUGG----UGGC---------------UCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 6828 | 0.65 | 0.493004 |
Target: 5'- gCGAUGGCGGguuacucgcagggaGCCAUCGuGGUUGGCCa- -3' miRNA: 3'- -GCUGUCGCC--------------UGGUGGC-UCGACUGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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