Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 1174 | 0.69 | 0.302121 |
Target: 5'- gCGGCGGUGGAgCCGCCGgaAGC-GGCCgGg -3' miRNA: 3'- -GCUGUCGCCU-GGUGGC--UCGaCUGGgU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 47532 | 0.69 | 0.294835 |
Target: 5'- -uGCGGUGGACCACCuGcGCcUGGCUCAg -3' miRNA: 3'- gcUGUCGCCUGGUGG-CuCG-ACUGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 3351 | 0.7 | 0.260461 |
Target: 5'- -cGCAGCGG-CCACguucuGCUGGCCCAc -3' miRNA: 3'- gcUGUCGCCuGGUGgcu--CGACUGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 6983 | 0.7 | 0.253991 |
Target: 5'- uGACAGUGGAuCCAcCCGGucGCUGcCCCu -3' miRNA: 3'- gCUGUCGCCU-GGU-GGCU--CGACuGGGu -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 48180 | 0.71 | 0.223604 |
Target: 5'- uCGACcuucgaggAGCGGAugcCCAUCGAGCUGAUCgCGa -3' miRNA: 3'- -GCUG--------UCGCCU---GGUGGCUCGACUGG-GU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 22876 | 0.71 | 0.21791 |
Target: 5'- aGA-AGUGGAUCGCCGAGCgaGACCUc -3' miRNA: 3'- gCUgUCGCCUGGUGGCUCGa-CUGGGu -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 42416 | 0.71 | 0.21791 |
Target: 5'- uCGGCAgGCaGGCCAggcccgaggggaUCGGGCUGGCCCGu -3' miRNA: 3'- -GCUGU-CGcCUGGU------------GGCUCGACUGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 5573 | 0.73 | 0.172067 |
Target: 5'- gCGGagcaGGCGG-CgCACCGAGCUGGCCg- -3' miRNA: 3'- -GCUg---UCGCCuG-GUGGCUCGACUGGgu -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 28003 | 0.73 | 0.172067 |
Target: 5'- aCGACGuGCGGAgCCcUCGGGCUGguGCCCAg -3' miRNA: 3'- -GCUGU-CGCCU-GGuGGCUCGAC--UGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 5819 | 0.73 | 0.167541 |
Target: 5'- -aGCGGaGGACCgagACUGGGCUGGCCCGg -3' miRNA: 3'- gcUGUCgCCUGG---UGGCUCGACUGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 29580 | 0.74 | 0.14648 |
Target: 5'- cCGAgAGCGGuCCACCGGcagccGCcGGCCCAu -3' miRNA: 3'- -GCUgUCGCCuGGUGGCU-----CGaCUGGGU- -5' |
|||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 31560 | 1.08 | 0.000439 |
Target: 5'- uCGACAGCGGACCACCGAGCUGACCCAu -3' miRNA: 3'- -GCUGUCGCCUGGUGGCUCGACUGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home