Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7184 | 5' | -59.4 | NC_001900.1 | + | 48180 | 0.71 | 0.223604 |
Target: 5'- uCGACcuucgaggAGCGGAugcCCAUCGAGCUGAUCgCGa -3' miRNA: 3'- -GCUG--------UCGCCU---GGUGGCUCGACUGG-GU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 47532 | 0.69 | 0.294835 |
Target: 5'- -uGCGGUGGACCACCuGcGCcUGGCUCAg -3' miRNA: 3'- gcUGUCGCCUGGUGG-CuCG-ACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 47252 | 0.67 | 0.400247 |
Target: 5'- aCGGCuuuGCGGACCuucuCC-AGCUuGCCCGc -3' miRNA: 3'- -GCUGu--CGCCUGGu---GGcUCGAcUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 42593 | 0.67 | 0.43718 |
Target: 5'- uGACAGCGGACU-CCaGAGCcugcuUGACgCGc -3' miRNA: 3'- gCUGUCGCCUGGuGG-CUCG-----ACUGgGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 42416 | 0.71 | 0.21791 |
Target: 5'- uCGGCAgGCaGGCCAggcccgaggggaUCGGGCUGGCCCGu -3' miRNA: 3'- -GCUGU-CGcCUGGU------------GGCUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36676 | 0.66 | 0.466127 |
Target: 5'- aGACcucaCGGACCucGCUgGAGCUGAUCCGc -3' miRNA: 3'- gCUGuc--GCCUGG--UGG-CUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 36224 | 0.66 | 0.446715 |
Target: 5'- uCGAaGGaCaGACCGCCGAuCUGGCCCc -3' miRNA: 3'- -GCUgUC-GcCUGGUGGCUcGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 33247 | 0.67 | 0.426827 |
Target: 5'- uGACGGCcucGACCACggcuucgCGGGCcuucUGGCCCAg -3' miRNA: 3'- gCUGUCGc--CUGGUG-------GCUCG----ACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 32817 | 0.68 | 0.34873 |
Target: 5'- uGugAGgGGGCCAgUCGucguuGCUGGCCCc -3' miRNA: 3'- gCugUCgCCUGGU-GGCu----CGACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 31560 | 1.08 | 0.000439 |
Target: 5'- uCGACAGCGGACCACCGAGCUGACCCAu -3' miRNA: 3'- -GCUGUCGCCUGGUGGCUCGACUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 29580 | 0.74 | 0.14648 |
Target: 5'- cCGAgAGCGGuCCACCGGcagccGCcGGCCCAu -3' miRNA: 3'- -GCUgUCGCCuGGUGGCU-----CGaCUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 28034 | 0.66 | 0.475995 |
Target: 5'- cCGGguGCGGagccGCCACCGucacaGGCcgugaGGCCCAg -3' miRNA: 3'- -GCUguCGCC----UGGUGGC-----UCGa----CUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 28003 | 0.73 | 0.172067 |
Target: 5'- aCGACGuGCGGAgCCcUCGGGCUGguGCCCAg -3' miRNA: 3'- -GCUGU-CGCCU-GGuGGCUCGAC--UGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 26245 | 0.68 | 0.382542 |
Target: 5'- -aACAGCGGACCuucGCUGAGCgcgUCCAu -3' miRNA: 3'- gcUGUCGCCUGG---UGGCUCGacuGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 25916 | 0.69 | 0.309543 |
Target: 5'- aCGACGGUcuGGuCCucgcCCGGGCUGcGCCCGu -3' miRNA: 3'- -GCUGUCG--CCuGGu---GGCUCGAC-UGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 24896 | 0.67 | 0.409293 |
Target: 5'- cCGACA-UGGugUACCGAGaccgGACCUAc -3' miRNA: 3'- -GCUGUcGCCugGUGGCUCga--CUGGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23313 | 0.66 | 0.475995 |
Target: 5'- aCGGCGGUcGGCC-CCG-GCUGGgCCGa -3' miRNA: 3'- -GCUGUCGcCUGGuGGCuCGACUgGGU- -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 23178 | 0.66 | 0.475995 |
Target: 5'- cCGGCcgAGCaGAUCGgUGAGCUGGCCg- -3' miRNA: 3'- -GCUG--UCGcCUGGUgGCUCGACUGGgu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 22962 | 0.66 | 0.485966 |
Target: 5'- gCGACAcccCGG-UCGCCGAGaUGACCCc -3' miRNA: 3'- -GCUGUc--GCCuGGUGGCUCgACUGGGu -5' |
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7184 | 5' | -59.4 | NC_001900.1 | + | 22876 | 0.71 | 0.21791 |
Target: 5'- aGA-AGUGGAUCGCCGAGCgaGACCUc -3' miRNA: 3'- gCUgUCGCCUGGUGGCUCGa-CUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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