miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7187 3' -56.3 NC_001900.1 + 47944 0.66 0.671595
Target:  5'- gCUCcuuGCCGggUGCUGuugcGUCCUCGGg -3'
miRNA:   3'- -GAGcuuCGGCa-ACGGCuu--CGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 22980 0.66 0.660715
Target:  5'- aUCGuGGacaUGcUGCUGcAGGCCCUCGGc -3'
miRNA:   3'- gAGCuUCg--GCaACGGC-UUCGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 40525 0.66 0.64981
Target:  5'- gCUCGAAGCCcaucUUGUCGAGGUaCUUGu -3'
miRNA:   3'- -GAGCUUCGGc---AACGGCUUCGgGAGCc -5'
7187 3' -56.3 NC_001900.1 + 39015 0.66 0.64981
Target:  5'- gCUCGGcuGCCGagaacUGCUGGAucuuGCCUUCGGc -3'
miRNA:   3'- -GAGCUu-CGGCa----ACGGCUU----CGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 20006 0.66 0.638888
Target:  5'- -cCGAGGCCGUggucgcgcUGCUGggG-UCUCGa -3'
miRNA:   3'- gaGCUUCGGCA--------ACGGCuuCgGGAGCc -5'
7187 3' -56.3 NC_001900.1 + 26066 0.66 0.638888
Target:  5'- cCUUGggGuuGaUGCCGAGGgCCUg-- -3'
miRNA:   3'- -GAGCuuCggCaACGGCUUCgGGAgcc -5'
7187 3' -56.3 NC_001900.1 + 15276 0.66 0.638888
Target:  5'- gUCGAGGCCGUgGCCGcacGGU--UCGGc -3'
miRNA:   3'- gAGCUUCGGCAaCGGCu--UCGggAGCC- -5'
7187 3' -56.3 NC_001900.1 + 44068 0.66 0.636703
Target:  5'- -cCGccGCCG-UGCUGGAGCCCgacgagcaugacCGGg -3'
miRNA:   3'- gaGCuuCGGCaACGGCUUCGGGa-----------GCC- -5'
7187 3' -56.3 NC_001900.1 + 8558 0.66 0.627961
Target:  5'- uUCGAgcuggcuccgcuGGaCCGggGCCaGAAGaucaCCCUCGGg -3'
miRNA:   3'- gAGCU------------UC-GGCaaCGG-CUUC----GGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 13821 0.66 0.627961
Target:  5'- gCUgGGugAGCgGgugGaCCGAgaAGCCCUCGGa -3'
miRNA:   3'- -GAgCU--UCGgCaa-C-GGCU--UCGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 9274 0.66 0.627961
Target:  5'- -aCGAGGCUGagcGCCGAccagaGGCCaUCGGc -3'
miRNA:   3'- gaGCUUCGGCaa-CGGCU-----UCGGgAGCC- -5'
7187 3' -56.3 NC_001900.1 + 47328 0.66 0.627961
Target:  5'- gCUUGGugcuGCCGUacaUGCUcauGCCCUUGGg -3'
miRNA:   3'- -GAGCUu---CGGCA---ACGGcuuCGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 17715 0.66 0.617037
Target:  5'- gCUCuGggGCCugUGCUGAccguggucgcugAGaCCCUCGGc -3'
miRNA:   3'- -GAG-CuuCGGcaACGGCU------------UC-GGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 34478 0.66 0.617037
Target:  5'- -cCGGcucGCCGUUGCguaCGGcuCCCUCGGa -3'
miRNA:   3'- gaGCUu--CGGCAACG---GCUucGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 25749 0.66 0.617037
Target:  5'- aCUCGGcccAGCCGggGCCGAccGCCg-UGGu -3'
miRNA:   3'- -GAGCU---UCGGCaaCGGCUu-CGGgaGCC- -5'
7187 3' -56.3 NC_001900.1 + 38565 0.67 0.595237
Target:  5'- aUCGu-GCCcagcagGCCGAGGCCCaucgCGGc -3'
miRNA:   3'- gAGCuuCGGcaa---CGGCUUCGGGa---GCC- -5'
7187 3' -56.3 NC_001900.1 + 27996 0.67 0.57356
Target:  5'- uUCGAAcaCGacgUG-CGGAGCCCUCGGg -3'
miRNA:   3'- gAGCUUcgGCa--ACgGCUUCGGGAGCC- -5'
7187 3' -56.3 NC_001900.1 + 34875 0.67 0.562789
Target:  5'- --aGAGGCCGUgccGCCGAAcGUCUUCa- -3'
miRNA:   3'- gagCUUCGGCAa--CGGCUU-CGGGAGcc -5'
7187 3' -56.3 NC_001900.1 + 25256 0.68 0.541419
Target:  5'- -cCGAuAGCCGa--CCGGAGCCCgucgUCGGa -3'
miRNA:   3'- gaGCU-UCGGCaacGGCUUCGGG----AGCC- -5'
7187 3' -56.3 NC_001900.1 + 35562 0.68 0.530834
Target:  5'- cCUUGAaauAGgCGUcaGCCGAAucGCCCUUGGa -3'
miRNA:   3'- -GAGCU---UCgGCAa-CGGCUU--CGGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.