Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7187 | 3' | -56.3 | NC_001900.1 | + | 47944 | 0.66 | 0.671595 |
Target: 5'- gCUCcuuGCCGggUGCUGuugcGUCCUCGGg -3' miRNA: 3'- -GAGcuuCGGCa-ACGGCuu--CGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 47328 | 0.66 | 0.627961 |
Target: 5'- gCUUGGugcuGCCGUacaUGCUcauGCCCUUGGg -3' miRNA: 3'- -GAGCUu---CGGCA---ACGGcuuCGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 46146 | 0.69 | 0.459206 |
Target: 5'- gUCGAugaccaGGCCGUUGCgCGAAGCggcagCUUCGa -3' miRNA: 3'- gAGCU------UCGGCAACG-GCUUCG-----GGAGCc -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 46040 | 0.68 | 0.499563 |
Target: 5'- -gCGGAcCCGUcGCCGGucGCCUUCGGu -3' miRNA: 3'- gaGCUUcGGCAaCGGCUu-CGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 45240 | 0.7 | 0.420649 |
Target: 5'- --aGAAGCCGUUGaaGAAGUUCUUGa -3' miRNA: 3'- gagCUUCGGCAACggCUUCGGGAGCc -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 44068 | 0.66 | 0.636703 |
Target: 5'- -cCGccGCCG-UGCUGGAGCCCgacgagcaugacCGGg -3' miRNA: 3'- gaGCuuCGGCaACGGCUUCGGGa-----------GCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 43623 | 0.69 | 0.449388 |
Target: 5'- cCUCcGGGgUGUUGCCGAGGUCggUUCGGg -3' miRNA: 3'- -GAGcUUCgGCAACGGCUUCGG--GAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 42018 | 0.72 | 0.302414 |
Target: 5'- cCUCGAAGCCGUacUGCuccagguuuuCGAgccGGUCCUCGa -3' miRNA: 3'- -GAGCUUCGGCA--ACG----------GCU---UCGGGAGCc -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 40525 | 0.66 | 0.64981 |
Target: 5'- gCUCGAAGCCcaucUUGUCGAGGUaCUUGu -3' miRNA: 3'- -GAGCUUCGGc---AACGGCUUCGgGAGCc -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 39015 | 0.66 | 0.64981 |
Target: 5'- gCUCGGcuGCCGagaacUGCUGGAucuuGCCUUCGGc -3' miRNA: 3'- -GAGCUu-CGGCa----ACGGCUU----CGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 38565 | 0.67 | 0.595237 |
Target: 5'- aUCGu-GCCcagcagGCCGAGGCCCaucgCGGc -3' miRNA: 3'- gAGCuuCGGcaa---CGGCUUCGGGa---GCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 37515 | 0.7 | 0.402118 |
Target: 5'- -cCGggGUCGggucgccgGCCGGAguGCCUUCGGu -3' miRNA: 3'- gaGCuuCGGCaa------CGGCUU--CGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 35562 | 0.68 | 0.530834 |
Target: 5'- cCUUGAaauAGgCGUcaGCCGAAucGCCCUUGGa -3' miRNA: 3'- -GAGCU---UCgGCAa-CGGCUU--CGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 34875 | 0.67 | 0.562789 |
Target: 5'- --aGAGGCCGUgccGCCGAAcGUCUUCa- -3' miRNA: 3'- gagCUUCGGCAa--CGGCUU-CGGGAGcc -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 34478 | 0.66 | 0.617037 |
Target: 5'- -cCGGcucGCCGUUGCguaCGGcuCCCUCGGa -3' miRNA: 3'- gaGCUu--CGGCAACG---GCUucGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 33915 | 0.7 | 0.393049 |
Target: 5'- cCUCGAAGCCGaacuCgGGAGCgugCCUCGGc -3' miRNA: 3'- -GAGCUUCGGCaac-GgCUUCG---GGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 31846 | 0.7 | 0.430106 |
Target: 5'- gUCGAGGauGUucuggagcUGCUGGAGCCC-CGGa -3' miRNA: 3'- gAGCUUCggCA--------ACGGCUUCGGGaGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 30619 | 1.1 | 0.000703 |
Target: 5'- cCUCGAAGCCGUUGCCGAAGCCCUCGGc -3' miRNA: 3'- -GAGCUUCGGCAACGGCUUCGGGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 29355 | 0.72 | 0.332598 |
Target: 5'- uUCGggGUCGgUGCCGAucAGCaccggacccaucuCCUCGGc -3' miRNA: 3'- gAGCuuCGGCaACGGCU--UCG-------------GGAGCC- -5' |
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7187 | 3' | -56.3 | NC_001900.1 | + | 28991 | 0.71 | 0.358129 |
Target: 5'- aCUCGAaguagaAGCCGggagGCCGA--CCUUCGGg -3' miRNA: 3'- -GAGCU------UCGGCaa--CGGCUucGGGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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