miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7191 3' -61.9 NC_001900.1 + 26978 0.66 0.355866
Target:  5'- uGUCGUGCCGCUGGCCucggaagGCCG-GCu -3'
miRNA:   3'- cUAGCGCGGUGGCUGGcg-----CGGCuCGu -5'
7191 3' -61.9 NC_001900.1 + 31201 0.66 0.355866
Target:  5'- cGAUUGgGCCGacgaccuccuucUUGGCCGUGCCGucAGCGa -3'
miRNA:   3'- -CUAGCgCGGU------------GGCUGGCGCGGC--UCGU- -5'
7191 3' -61.9 NC_001900.1 + 25756 0.66 0.347746
Target:  5'- --cCGCGCC-CCGGCgCaCGCgGAGCu -3'
miRNA:   3'- cuaGCGCGGuGGCUG-GcGCGgCUCGu -5'
7191 3' -61.9 NC_001900.1 + 24551 0.66 0.339758
Target:  5'- --aCGCGCCgACCG-CCGUGaCCGgagucAGCAc -3'
miRNA:   3'- cuaGCGCGG-UGGCuGGCGC-GGC-----UCGU- -5'
7191 3' -61.9 NC_001900.1 + 37518 0.67 0.324186
Target:  5'- gGGUCGgGUCGCCGGCCggaGUGCCuucGGUAg -3'
miRNA:   3'- -CUAGCgCGGUGGCUGG---CGCGGc--UCGU- -5'
7191 3' -61.9 NC_001900.1 + 44907 0.67 0.31962
Target:  5'- --aCGCGaguuguuuggggucaCCGCCGGCCGCuucGCCGgucGGCAg -3'
miRNA:   3'- cuaGCGC---------------GGUGGCUGGCG---CGGC---UCGU- -5'
7191 3' -61.9 NC_001900.1 + 11339 0.67 0.316602
Target:  5'- ---gGUuaCGCCGGuuGCGUCGAGCGg -3'
miRNA:   3'- cuagCGcgGUGGCUggCGCGGCUCGU- -5'
7191 3' -61.9 NC_001900.1 + 17558 0.67 0.309152
Target:  5'- cAUCGCGCUgaugcccgcGCUGACUucgGUGUCGAGCu -3'
miRNA:   3'- cUAGCGCGG---------UGGCUGG---CGCGGCUCGu -5'
7191 3' -61.9 NC_001900.1 + 25448 0.67 0.298947
Target:  5'- -uUCGCGCCACCGAccucgacauagaccCCGUcggugauGCCGAccGUAg -3'
miRNA:   3'- cuAGCGCGGUGGCU--------------GGCG-------CGGCU--CGU- -5'
7191 3' -61.9 NC_001900.1 + 38626 0.68 0.280693
Target:  5'- gGAUCGCuGCaACCGACCaguuaCGCCaGGGCGa -3'
miRNA:   3'- -CUAGCG-CGgUGGCUGGc----GCGG-CUCGU- -5'
7191 3' -61.9 NC_001900.1 + 40304 0.68 0.260743
Target:  5'- cGGUCGgcagugaGCCGCUgcggccgugguuGGCCGCGUCGAGUg -3'
miRNA:   3'- -CUAGCg------CGGUGG------------CUGGCGCGGCUCGu -5'
7191 3' -61.9 NC_001900.1 + 21275 0.68 0.260743
Target:  5'- cGGUgGCGCgAUCGACCugccccCGCUGGGCGg -3'
miRNA:   3'- -CUAgCGCGgUGGCUGGc-----GCGGCUCGU- -5'
7191 3' -61.9 NC_001900.1 + 47453 0.68 0.248095
Target:  5'- --gUGuCGCCACCGGCCGagaaGCCGAccucgaacaGCGa -3'
miRNA:   3'- cuaGC-GCGGUGGCUGGCg---CGGCU---------CGU- -5'
7191 3' -61.9 NC_001900.1 + 37918 0.68 0.248095
Target:  5'- uGUUGCGUCACCGuggaugagGCGCUGAGCu -3'
miRNA:   3'- cUAGCGCGGUGGCugg-----CGCGGCUCGu -5'
7191 3' -61.9 NC_001900.1 + 41111 0.68 0.241963
Target:  5'- --aUGCgGCCACCGGCCGCG--GAGUAg -3'
miRNA:   3'- cuaGCG-CGGUGGCUGGCGCggCUCGU- -5'
7191 3' -61.9 NC_001900.1 + 15094 0.69 0.223188
Target:  5'- cGUCGaccuggacuggaGCCACCGGCUG-GUCGAGCGu -3'
miRNA:   3'- cUAGCg-----------CGGUGGCUGGCgCGGCUCGU- -5'
7191 3' -61.9 NC_001900.1 + 43054 0.69 0.213181
Target:  5'- -cUCGCggagGUCACCGGCuCGCGCCGAu-- -3'
miRNA:   3'- cuAGCG----CGGUGGCUG-GCGCGGCUcgu -5'
7191 3' -61.9 NC_001900.1 + 25327 0.69 0.213181
Target:  5'- -cUCGaUGCCGUCGACCGUGCC-AGCGa -3'
miRNA:   3'- cuAGC-GCGGUGGCUGGCGCGGcUCGU- -5'
7191 3' -61.9 NC_001900.1 + 3175 0.7 0.18739
Target:  5'- cGGUUGcCGCUACCGACUGCucccccGCCGGGgGu -3'
miRNA:   3'- -CUAGC-GCGGUGGCUGGCG------CGGCUCgU- -5'
7191 3' -61.9 NC_001900.1 + 26036 0.71 0.164386
Target:  5'- --gCGUGCCGCCGugC-CGUCGGGUAc -3'
miRNA:   3'- cuaGCGCGGUGGCugGcGCGGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.