miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7195 5' -58.8 NC_001900.1 + 4820 0.68 0.365812
Target:  5'- aCUGCUCGGguCUGGUUCugcagacggcagccuGguACGGCGGUCg -3'
miRNA:   3'- -GACGAGCC--GGCCGAG---------------U--UGCUGCCAGa -5'
7195 5' -58.8 NC_001900.1 + 3786 0.7 0.268338
Target:  5'- -gGCgucgucaccuucgCGGUCGGCgugaccUCGACGGCGGUCa -3'
miRNA:   3'- gaCGa------------GCCGGCCG------AGUUGCUGCCAGa -5'
7195 5' -58.8 NC_001900.1 + 2355 0.69 0.354044
Target:  5'- -aGUUgGGCCGGCUCGaaGCGuCGG-Ca -3'
miRNA:   3'- gaCGAgCCGGCCGAGU--UGCuGCCaGa -5'
7195 5' -58.8 NC_001900.1 + 1615 0.66 0.493194
Target:  5'- gCUuCUCGGCCGGUggCGACaccccCGGUCa -3'
miRNA:   3'- -GAcGAGCCGGCCGa-GUUGcu---GCCAGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.