miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7201 5' -52.6 NC_001900.1 + 30852 0.66 0.85837
Target:  5'- -aUCuuGCCGGGGAGCUGucCGACGAa- -3'
miRNA:   3'- gaAGccCGGCUCCUUGAU--GCUGUUgg -5'
7201 5' -52.6 NC_001900.1 + 12890 0.66 0.85837
Target:  5'- gUUCGGcuGCCGAGGcgauGCUgaaGCGA--GCCg -3'
miRNA:   3'- gAAGCC--CGGCUCCu---UGA---UGCUguUGG- -5'
7201 5' -52.6 NC_001900.1 + 18785 0.66 0.857528
Target:  5'- -gUCGcGGaggcguUCGAGGAGCUGgGACAcaaguucACCg -3'
miRNA:   3'- gaAGC-CC------GGCUCCUUGAUgCUGU-------UGG- -5'
7201 5' -52.6 NC_001900.1 + 45762 0.66 0.849838
Target:  5'- --cCGGGUCGAGGugg-GgGAuCGACCa -3'
miRNA:   3'- gaaGCCCGGCUCCuugaUgCU-GUUGG- -5'
7201 5' -52.6 NC_001900.1 + 11965 0.66 0.84107
Target:  5'- gCUUCGguGGUCGcAGGAACUGCcgcuCAACg -3'
miRNA:   3'- -GAAGC--CCGGC-UCCUUGAUGcu--GUUGg -5'
7201 5' -52.6 NC_001900.1 + 9972 0.66 0.840181
Target:  5'- -aUCGaGGCCacaagcuGAGGAgucaaACU-UGACAGCCa -3'
miRNA:   3'- gaAGC-CCGG-------CUCCU-----UGAuGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 4824 0.66 0.832075
Target:  5'- -cUCGGGUCu-GGuucuGCagACGGCAGCCu -3'
miRNA:   3'- gaAGCCCGGcuCCu---UGa-UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 39394 0.66 0.822864
Target:  5'- --cCGGGUcucccagcuCGuuGAGCUGCGAgCAGCCu -3'
miRNA:   3'- gaaGCCCG---------GCucCUUGAUGCU-GUUGG- -5'
7201 5' -52.6 NC_001900.1 + 37603 0.66 0.822864
Target:  5'- -cUgGGGuUCGGGGGAUUACG-CAGCg -3'
miRNA:   3'- gaAgCCC-GGCUCCUUGAUGCuGUUGg -5'
7201 5' -52.6 NC_001900.1 + 17784 0.67 0.813446
Target:  5'- aCUUCGGuGgCGAGaucGGACUccUGACGACCu -3'
miRNA:   3'- -GAAGCC-CgGCUC---CUUGAu-GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 39589 0.67 0.813446
Target:  5'- cCUUCGGGuuGuccaucagcAGGcagAAgUACGACAGCa -3'
miRNA:   3'- -GAAGCCCggC---------UCC---UUgAUGCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 41102 0.67 0.813446
Target:  5'- -cUCGcGGCCGuGGAcCUugGucuCGAUCa -3'
miRNA:   3'- gaAGC-CCGGCuCCUuGAugCu--GUUGG- -5'
7201 5' -52.6 NC_001900.1 + 42746 0.67 0.813446
Target:  5'- --cCGuGGCCGGuGcGGCUGCGcCGACCa -3'
miRNA:   3'- gaaGC-CCGGCU-CcUUGAUGCuGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 19963 0.67 0.811538
Target:  5'- --aCGGGaagcucaCCGAGGAGCUGaugggucUGGCGAUCc -3'
miRNA:   3'- gaaGCCC-------GGCUCCUUGAU-------GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 11798 0.67 0.794032
Target:  5'- --gCGGGCCGuG----UACGACGGCCc -3'
miRNA:   3'- gaaGCCCGGCuCcuugAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 22767 0.67 0.784057
Target:  5'- --cUGGGCCGaAGGcGCguuCGAC-ACCg -3'
miRNA:   3'- gaaGCCCGGC-UCCuUGau-GCUGuUGG- -5'
7201 5' -52.6 NC_001900.1 + 20498 0.67 0.784057
Target:  5'- uCUUCGGGCCGGccaaguGGugcuuGCUGgucacgcuguuCGugAACCu -3'
miRNA:   3'- -GAAGCCCGGCU------CCu----UGAU-----------GCugUUGG- -5'
7201 5' -52.6 NC_001900.1 + 20351 0.67 0.784057
Target:  5'- --cCGGGCCGucuu-CUuCGACGGCCa -3'
miRNA:   3'- gaaGCCCGGCuccuuGAuGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 47311 0.67 0.77392
Target:  5'- -cUCGGGCuUGAGGuagAGCUugGuGCuGCCg -3'
miRNA:   3'- gaAGCCCG-GCUCC---UUGAugC-UGuUGG- -5'
7201 5' -52.6 NC_001900.1 + 15558 0.67 0.77392
Target:  5'- --cCGGGCgGuGGAGcCUGacccaaacuUGACAGCCa -3'
miRNA:   3'- gaaGCCCGgCuCCUU-GAU---------GCUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.