Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7201 | 5' | -52.6 | NC_001900.1 | + | 12890 | 0.66 | 0.85837 |
Target: 5'- gUUCGGcuGCCGAGGcgauGCUgaaGCGA--GCCg -3' miRNA: 3'- gAAGCC--CGGCUCCu---UGA---UGCUguUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 30852 | 0.66 | 0.85837 |
Target: 5'- -aUCuuGCCGGGGAGCUGucCGACGAa- -3' miRNA: 3'- gaAGccCGGCUCCUUGAU--GCUGUUgg -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 18785 | 0.66 | 0.857528 |
Target: 5'- -gUCGcGGaggcguUCGAGGAGCUGgGACAcaaguucACCg -3' miRNA: 3'- gaAGC-CC------GGCUCCUUGAUgCUGU-------UGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 45762 | 0.66 | 0.849838 |
Target: 5'- --cCGGGUCGAGGugg-GgGAuCGACCa -3' miRNA: 3'- gaaGCCCGGCUCCuugaUgCU-GUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 11965 | 0.66 | 0.84107 |
Target: 5'- gCUUCGguGGUCGcAGGAACUGCcgcuCAACg -3' miRNA: 3'- -GAAGC--CCGGC-UCCUUGAUGcu--GUUGg -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 9972 | 0.66 | 0.840181 |
Target: 5'- -aUCGaGGCCacaagcuGAGGAgucaaACU-UGACAGCCa -3' miRNA: 3'- gaAGC-CCGG-------CUCCU-----UGAuGCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 4824 | 0.66 | 0.832075 |
Target: 5'- -cUCGGGUCu-GGuucuGCagACGGCAGCCu -3' miRNA: 3'- gaAGCCCGGcuCCu---UGa-UGCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 37603 | 0.66 | 0.822864 |
Target: 5'- -cUgGGGuUCGGGGGAUUACG-CAGCg -3' miRNA: 3'- gaAgCCC-GGCUCCUUGAUGCuGUUGg -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 39394 | 0.66 | 0.822864 |
Target: 5'- --cCGGGUcucccagcuCGuuGAGCUGCGAgCAGCCu -3' miRNA: 3'- gaaGCCCG---------GCucCUUGAUGCU-GUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 41102 | 0.67 | 0.813446 |
Target: 5'- -cUCGcGGCCGuGGAcCUugGucuCGAUCa -3' miRNA: 3'- gaAGC-CCGGCuCCUuGAugCu--GUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 17784 | 0.67 | 0.813446 |
Target: 5'- aCUUCGGuGgCGAGaucGGACUccUGACGACCu -3' miRNA: 3'- -GAAGCC-CgGCUC---CUUGAu-GCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 39589 | 0.67 | 0.813446 |
Target: 5'- cCUUCGGGuuGuccaucagcAGGcagAAgUACGACAGCa -3' miRNA: 3'- -GAAGCCCggC---------UCC---UUgAUGCUGUUGg -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 42746 | 0.67 | 0.813446 |
Target: 5'- --cCGuGGCCGGuGcGGCUGCGcCGACCa -3' miRNA: 3'- gaaGC-CCGGCU-CcUUGAUGCuGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 19963 | 0.67 | 0.811538 |
Target: 5'- --aCGGGaagcucaCCGAGGAGCUGaugggucUGGCGAUCc -3' miRNA: 3'- gaaGCCC-------GGCUCCUUGAU-------GCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 11798 | 0.67 | 0.794032 |
Target: 5'- --gCGGGCCGuG----UACGACGGCCc -3' miRNA: 3'- gaaGCCCGGCuCcuugAUGCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 20498 | 0.67 | 0.784057 |
Target: 5'- uCUUCGGGCCGGccaaguGGugcuuGCUGgucacgcuguuCGugAACCu -3' miRNA: 3'- -GAAGCCCGGCU------CCu----UGAU-----------GCugUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 22767 | 0.67 | 0.784057 |
Target: 5'- --cUGGGCCGaAGGcGCguuCGAC-ACCg -3' miRNA: 3'- gaaGCCCGGC-UCCuUGau-GCUGuUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 20351 | 0.67 | 0.784057 |
Target: 5'- --cCGGGCCGucuu-CUuCGACGGCCa -3' miRNA: 3'- gaaGCCCGGCuccuuGAuGCUGUUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 47311 | 0.67 | 0.77392 |
Target: 5'- -cUCGGGCuUGAGGuagAGCUugGuGCuGCCg -3' miRNA: 3'- gaAGCCCG-GCUCC---UUGAugC-UGuUGG- -5' |
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7201 | 5' | -52.6 | NC_001900.1 | + | 15558 | 0.67 | 0.77392 |
Target: 5'- --cCGGGCgGuGGAGcCUGacccaaacuUGACAGCCa -3' miRNA: 3'- gaaGCCCGgCuCCUU-GAU---------GCUGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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