miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7201 5' -52.6 NC_001900.1 + 30852 0.66 0.85837
Target:  5'- -aUCuuGCCGGGGAGCUGucCGACGAa- -3'
miRNA:   3'- gaAGccCGGCUCCUUGAU--GCUGUUgg -5'
7201 5' -52.6 NC_001900.1 + 47311 0.67 0.77392
Target:  5'- -cUCGGGCuUGAGGuagAGCUugGuGCuGCCg -3'
miRNA:   3'- gaAGCCCG-GCUCC---UUGAugC-UGuUGG- -5'
7201 5' -52.6 NC_001900.1 + 19304 0.68 0.763632
Target:  5'- aCUUC-GGCCGGGu--CUACGGCGgugggGCCa -3'
miRNA:   3'- -GAAGcCCGGCUCcuuGAUGCUGU-----UGG- -5'
7201 5' -52.6 NC_001900.1 + 46335 0.68 0.73198
Target:  5'- -gUCGGGuucuCCGGGGugUUGCGACGAa- -3'
miRNA:   3'- gaAGCCC----GGCUCCuuGAUGCUGUUgg -5'
7201 5' -52.6 NC_001900.1 + 43179 0.69 0.666211
Target:  5'- --gCGGGUCGccguagGGGGACUGCGucACGACg -3'
miRNA:   3'- gaaGCCCGGC------UCCUUGAUGC--UGUUGg -5'
7201 5' -52.6 NC_001900.1 + 14600 0.73 0.470054
Target:  5'- --aCGGcgaGCCGGGGAugUGgGACAGCa -3'
miRNA:   3'- gaaGCC---CGGCUCCUugAUgCUGUUGg -5'
7201 5' -52.6 NC_001900.1 + 23584 0.74 0.410895
Target:  5'- --cCGGGCCGuGGGAgccacgcuggcgGCUcaggccgguGCGACGACCa -3'
miRNA:   3'- gaaGCCCGGC-UCCU------------UGA---------UGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 27548 0.78 0.250362
Target:  5'- gUUCGGGCuCGGGucuuguggaucuGGGCUGCGAUGGCCg -3'
miRNA:   3'- gAAGCCCG-GCUC------------CUUGAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 22726 1.14 0.000895
Target:  5'- aCUUCGGGCCGAGGAACUACGACAACCg -3'
miRNA:   3'- -GAAGCCCGGCUCCUUGAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 20351 0.67 0.784057
Target:  5'- --cCGGGCCGucuu-CUuCGACGGCCa -3'
miRNA:   3'- gaaGCCCGGCuccuuGAuGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 11798 0.67 0.794032
Target:  5'- --gCGGGCCGuG----UACGACGGCCc -3'
miRNA:   3'- gaaGCCCGGCuCcuugAUGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 12890 0.66 0.85837
Target:  5'- gUUCGGcuGCCGAGGcgauGCUgaaGCGA--GCCg -3'
miRNA:   3'- gAAGCC--CGGCUCCu---UGA---UGCUguUGG- -5'
7201 5' -52.6 NC_001900.1 + 18785 0.66 0.857528
Target:  5'- -gUCGcGGaggcguUCGAGGAGCUGgGACAcaaguucACCg -3'
miRNA:   3'- gaAGC-CC------GGCUCCUUGAUgCUGU-------UGG- -5'
7201 5' -52.6 NC_001900.1 + 45762 0.66 0.849838
Target:  5'- --cCGGGUCGAGGugg-GgGAuCGACCa -3'
miRNA:   3'- gaaGCCCGGCUCCuugaUgCU-GUUGG- -5'
7201 5' -52.6 NC_001900.1 + 9972 0.66 0.840181
Target:  5'- -aUCGaGGCCacaagcuGAGGAgucaaACU-UGACAGCCa -3'
miRNA:   3'- gaAGC-CCGG-------CUCCU-----UGAuGCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 37603 0.66 0.822864
Target:  5'- -cUgGGGuUCGGGGGAUUACG-CAGCg -3'
miRNA:   3'- gaAgCCC-GGCUCCUUGAUGCuGUUGg -5'
7201 5' -52.6 NC_001900.1 + 42746 0.67 0.813446
Target:  5'- --cCGuGGCCGGuGcGGCUGCGcCGACCa -3'
miRNA:   3'- gaaGC-CCGGCU-CcUUGAUGCuGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 17784 0.67 0.813446
Target:  5'- aCUUCGGuGgCGAGaucGGACUccUGACGACCu -3'
miRNA:   3'- -GAAGCC-CgGCUC---CUUGAu-GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 19963 0.67 0.811538
Target:  5'- --aCGGGaagcucaCCGAGGAGCUGaugggucUGGCGAUCc -3'
miRNA:   3'- gaaGCCC-------GGCUCCUUGAU-------GCUGUUGG- -5'
7201 5' -52.6 NC_001900.1 + 11965 0.66 0.84107
Target:  5'- gCUUCGguGGUCGcAGGAACUGCcgcuCAACg -3'
miRNA:   3'- -GAAGC--CCGGC-UCCUUGAUGcu--GUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.