miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7204 5' -58.1 NC_001900.1 + 21083 0.66 0.537599
Target:  5'- gUGCCCGCcggGGgCGGCGUCAacGUGcCGAu -3'
miRNA:   3'- aACGGGCG---CUgGCUGUAGU--CGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 24034 0.66 0.537599
Target:  5'- -aGCCCGCG-CCaACcUCGGUGcCGAg -3'
miRNA:   3'- aaCGGGCGCuGGcUGuAGUCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 23590 0.66 0.527027
Target:  5'- -cGCCUaCGGUCGGCAUCAcCGACGGg -3'
miRNA:   3'- aaCGGGcGCUGGCUGUAGUcGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 40316 0.66 0.516533
Target:  5'- -aGCCgcUGCGGCCGugGUUGGCcGCGu -3'
miRNA:   3'- aaCGG--GCGCUGGCugUAGUCGcUGCu -5'
7204 5' -58.1 NC_001900.1 + 12758 0.66 0.516533
Target:  5'- -cGCCCGU--CCGACcauccUCAGCGACc- -3'
miRNA:   3'- aaCGGGCGcuGGCUGu----AGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 34621 0.66 0.516533
Target:  5'- gUGCCCGCGAagaacCCGgACGg-GGCGugGc -3'
miRNA:   3'- aACGGGCGCU-----GGC-UGUagUCGCugCu -5'
7204 5' -58.1 NC_001900.1 + 13162 0.66 0.495806
Target:  5'- -cGCCCaGCGcCUGAUcgCGGCuGGCGGu -3'
miRNA:   3'- aaCGGG-CGCuGGCUGuaGUCG-CUGCU- -5'
7204 5' -58.1 NC_001900.1 + 29227 0.66 0.485585
Target:  5'- -aGUCCGCG-UCGAagguCAUCcgacGGCGACGAg -3'
miRNA:   3'- aaCGGGCGCuGGCU----GUAG----UCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 3349 0.67 0.469443
Target:  5'- -gGCCUGCGGgCGACcuguUCcucgaacuggagaccGGCGGCGAg -3'
miRNA:   3'- aaCGGGCGCUgGCUGu---AG---------------UCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 42373 0.67 0.46545
Target:  5'- cUGCCCGCG-UCGAUcgCucgAGCGACc- -3'
miRNA:   3'- aACGGGCGCuGGCUGuaG---UCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 13000 0.67 0.46545
Target:  5'- -cGCUC-UGACCaacGugGUCAGCGGCGGc -3'
miRNA:   3'- aaCGGGcGCUGG---CugUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 31206 0.67 0.462467
Target:  5'- -gGgCCGaCGACCuccuucuuggccguGcCGUCAGCGACGAa -3'
miRNA:   3'- aaCgGGC-GCUGG--------------CuGUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 2263 0.67 0.455547
Target:  5'- -gGCCa--GGUCGAgGUCAGCGACGAg -3'
miRNA:   3'- aaCGGgcgCUGGCUgUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 14500 0.67 0.445758
Target:  5'- cUGaCCCGa-GCCGcCAUCGGCGGCa- -3'
miRNA:   3'- aAC-GGGCgcUGGCuGUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 1778 0.67 0.445758
Target:  5'- -gGUgCGUGACCGGgucacugugacCAUCGGCGACu- -3'
miRNA:   3'- aaCGgGCGCUGGCU-----------GUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 11659 0.67 0.436088
Target:  5'- -aGCCCGaCGAggUCGuccACAUCGGCGACc- -3'
miRNA:   3'- aaCGGGC-GCU--GGC---UGUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 22257 0.67 0.436088
Target:  5'- -gGCCCaGCGaugGCCGAgGUCguggAGUGACGGa -3'
miRNA:   3'- aaCGGG-CGC---UGGCUgUAG----UCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 32109 0.67 0.436088
Target:  5'- -aGCgCCGaacGCUGACAgCAGCGACGGc -3'
miRNA:   3'- aaCG-GGCgc-UGGCUGUaGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 31049 0.67 0.433211
Target:  5'- -gGCaCGaUGACCGGCAUCAGCuuggugaacgccugGACGAu -3'
miRNA:   3'- aaCGgGC-GCUGGCUGUAGUCG--------------CUGCU- -5'
7204 5' -58.1 NC_001900.1 + 45104 0.67 0.42654
Target:  5'- gUGCCCGUgaGACCGGCcgcguUCGcCGugGAg -3'
miRNA:   3'- aACGGGCG--CUGGCUGu----AGUcGCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.