miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7206 5' -54.1 NC_001900.1 + 20867 1.14 0.000497
Target:  5'- aGGCCAACGACAUCGCACAAGGCCAGCu -3'
miRNA:   3'- -CCGGUUGCUGUAGCGUGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 9028 0.81 0.115056
Target:  5'- aGGCCGugacCGACAUCGUcggcgacggcuACGAGGCCAuGCa -3'
miRNA:   3'- -CCGGUu---GCUGUAGCG-----------UGUUCCGGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 48909 0.78 0.185327
Target:  5'- aGGCCGGCauucGCAUCGuCGC-AGGUCAGCa -3'
miRNA:   3'- -CCGGUUGc---UGUAGC-GUGuUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 3533 0.76 0.230042
Target:  5'- cGCCAuCGACGcggCGCuCGGGGCCGGUa -3'
miRNA:   3'- cCGGUuGCUGUa--GCGuGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 23576 0.76 0.236232
Target:  5'- cGUCAACGACAaCGCGCcuacGGUCGGCa -3'
miRNA:   3'- cCGGUUGCUGUaGCGUGuu--CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 4536 0.76 0.236232
Target:  5'- uGGUgGACGugGUcaggucCGUACAAcGGCCAGCg -3'
miRNA:   3'- -CCGgUUGCugUA------GCGUGUU-CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 22094 0.75 0.254308
Target:  5'- aGGCCAGCGGCAcgacaugaacaaCGCAgCGAGGUgGGCc -3'
miRNA:   3'- -CCGGUUGCUGUa-----------GCGU-GUUCCGgUCG- -5'
7206 5' -54.1 NC_001900.1 + 10005 0.75 0.262396
Target:  5'- aGCCAcCGGCAUCGCGgAGGucauCCAGCg -3'
miRNA:   3'- cCGGUuGCUGUAGCGUgUUCc---GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 30482 0.75 0.276339
Target:  5'- cGGCCGGCucACGUCGgGCAccagcGGuGCCAGCg -3'
miRNA:   3'- -CCGGUUGc-UGUAGCgUGU-----UC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 40037 0.74 0.290867
Target:  5'- cGCCGACGAUGUCGguCAcGGCCuccccgAGCu -3'
miRNA:   3'- cCGGUUGCUGUAGCguGUuCCGG------UCG- -5'
7206 5' -54.1 NC_001900.1 + 6339 0.74 0.305987
Target:  5'- uGGUCAACGACAUCGaGgAGGGUCuGUg -3'
miRNA:   3'- -CCGGUUGCUGUAGCgUgUUCCGGuCG- -5'
7206 5' -54.1 NC_001900.1 + 1482 0.74 0.305987
Target:  5'- cGGCCGACGAaaCGUCGCu--GGGCCuGa -3'
miRNA:   3'- -CCGGUUGCU--GUAGCGuguUCCGGuCg -5'
7206 5' -54.1 NC_001900.1 + 21585 0.73 0.338013
Target:  5'- cGCCGACGGCcg-GCuCAAGGCCGuGCg -3'
miRNA:   3'- cCGGUUGCUGuagCGuGUUCCGGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 7141 0.73 0.346391
Target:  5'- cGCCAuCGGCcggAUCGUGaugAAGGCCAGCg -3'
miRNA:   3'- cCGGUuGCUG---UAGCGUg--UUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 42078 0.73 0.354057
Target:  5'- gGGCCggUGACGUgGUggagcccgaucacGCAAGaGCCAGUc -3'
miRNA:   3'- -CCGGuuGCUGUAgCG-------------UGUUC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 16982 0.73 0.354916
Target:  5'- aGCCggUGugGUCGCACucGGCauggaCGGCa -3'
miRNA:   3'- cCGGuuGCugUAGCGUGuuCCG-----GUCG- -5'
7206 5' -54.1 NC_001900.1 + 8063 0.73 0.354916
Target:  5'- gGGCCuGACGGCAagGCcaACgAAGGCCAcGCg -3'
miRNA:   3'- -CCGG-UUGCUGUagCG--UG-UUCCGGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 12251 0.73 0.363589
Target:  5'- gGGCCAgaaGAUccCGCACuGGGUCGGCg -3'
miRNA:   3'- -CCGGUug-CUGuaGCGUGuUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 40737 0.73 0.372407
Target:  5'- cGGUCAGCGAUGUCGUcaGCGccGCgAGCg -3'
miRNA:   3'- -CCGGUUGCUGUAGCG--UGUucCGgUCG- -5'
7206 5' -54.1 NC_001900.1 + 8332 0.73 0.372407
Target:  5'- cGCUGACGACAUCGCugAccGCUGGg -3'
miRNA:   3'- cCGGUUGCUGUAGCGugUucCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.