miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7206 5' -54.1 NC_001900.1 + 555 0.66 0.760877
Target:  5'- uGCC-GCGACAUCGCGaauacgccgccguUucGGgCGGCg -3'
miRNA:   3'- cCGGuUGCUGUAGCGU-------------GuuCCgGUCG- -5'
7206 5' -54.1 NC_001900.1 + 1482 0.74 0.305987
Target:  5'- cGGCCGACGAaaCGUCGCu--GGGCCuGa -3'
miRNA:   3'- -CCGGUUGCU--GUAGCGuguUCCGGuCg -5'
7206 5' -54.1 NC_001900.1 + 1586 0.67 0.686506
Target:  5'- gGGCCGGaucuCcUCGCuguuCGAGGUCGGCu -3'
miRNA:   3'- -CCGGUUgcu-GuAGCGu---GUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 2194 0.67 0.664298
Target:  5'- cGUCGacACGACGuUCGCcgaagGCAAGGCaCAGUu -3'
miRNA:   3'- cCGGU--UGCUGU-AGCG-----UGUUCCG-GUCG- -5'
7206 5' -54.1 NC_001900.1 + 2273 0.68 0.59727
Target:  5'- aGGUCAGCGACGagcaguUgGCugAGGcggaacacGCCAGCc -3'
miRNA:   3'- -CCGGUUGCUGU------AgCGugUUC--------CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 2632 0.67 0.6854
Target:  5'- cGGCC-AUGAgG-CGCAgagguacCGAGGCCAGa -3'
miRNA:   3'- -CCGGuUGCUgUaGCGU-------GUUCCGGUCg -5'
7206 5' -54.1 NC_001900.1 + 2701 0.7 0.488813
Target:  5'- cGCCAGCGGCcagaggcuUCGCgACGAcuGGCgCGGCa -3'
miRNA:   3'- cCGGUUGCUGu-------AGCG-UGUU--CCG-GUCG- -5'
7206 5' -54.1 NC_001900.1 + 3472 0.68 0.641965
Target:  5'- cGGCCAucgacuacaACGACGUguccgagaaccCGCAgGgucuGGCCGGUg -3'
miRNA:   3'- -CCGGU---------UGCUGUA-----------GCGUgUu---CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 3533 0.76 0.230042
Target:  5'- cGCCAuCGACGcggCGCuCGGGGCCGGUa -3'
miRNA:   3'- cCGGUuGCUGUa--GCGuGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 4061 0.72 0.409106
Target:  5'- aGGCCGACcagguuGACGugcUCGCACGuGGCUuccGGCa -3'
miRNA:   3'- -CCGGUUG------CUGU---AGCGUGUuCCGG---UCG- -5'
7206 5' -54.1 NC_001900.1 + 4365 0.67 0.697535
Target:  5'- cGGCCAGCGGCcUgGCugccGCAGGGgaCC-GCg -3'
miRNA:   3'- -CCGGUUGCUGuAgCG----UGUUCC--GGuCG- -5'
7206 5' -54.1 NC_001900.1 + 4536 0.76 0.236232
Target:  5'- uGGUgGACGugGUcaggucCGUACAAcGGCCAGCg -3'
miRNA:   3'- -CCGgUUGCugUA------GCGUGUU-CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 4736 0.67 0.686506
Target:  5'- gGGUCcACGACAUgugcCGCGCucGcGCUGGCa -3'
miRNA:   3'- -CCGGuUGCUGUA----GCGUGuuC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 5464 0.66 0.740878
Target:  5'- aGGUCGACGGagacgGUCGgcucUACAAGGgCCGGUc -3'
miRNA:   3'- -CCGGUUGCUg----UAGC----GUGUUCC-GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 6276 0.68 0.63861
Target:  5'- aGCCGcgaacaucgGCGACAUCGUcgcuggcgcucucaACcuGGUCGGCg -3'
miRNA:   3'- cCGGU---------UGCUGUAGCG--------------UGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 6335 0.67 0.664298
Target:  5'- cGGCC-ACGGC--CGCuguCAAGGucaaCCAGCa -3'
miRNA:   3'- -CCGGuUGCUGuaGCGu--GUUCC----GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 6339 0.74 0.305987
Target:  5'- uGGUCAACGACAUCGaGgAGGGUCuGUg -3'
miRNA:   3'- -CCGGUUGCUGUAGCgUgUUCCGGuCG- -5'
7206 5' -54.1 NC_001900.1 + 7141 0.73 0.346391
Target:  5'- cGCCAuCGGCcggAUCGUGaugAAGGCCAGCg -3'
miRNA:   3'- cCGGUuGCUG---UAGCGUg--UUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 7203 0.66 0.740878
Target:  5'- -cCCAGCu-CAUCGaGCuuGGCCAGCg -3'
miRNA:   3'- ccGGUUGcuGUAGCgUGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 7963 0.68 0.652025
Target:  5'- cGGCCggUGGC--CGCAuCGAGGCgcaaccuccucacCAGCa -3'
miRNA:   3'- -CCGGuuGCUGuaGCGU-GUUCCG-------------GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.