miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7206 5' -54.1 NC_001900.1 + 48909 0.78 0.185327
Target:  5'- aGGCCGGCauucGCAUCGuCGC-AGGUCAGCa -3'
miRNA:   3'- -CCGGUUGc---UGUAGC-GUGuUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 11349 0.71 0.458013
Target:  5'- aGCCAGCu-CAUUGCaucugGCAAGGCCcGCu -3'
miRNA:   3'- cCGGUUGcuGUAGCG-----UGUUCCGGuCG- -5'
7206 5' -54.1 NC_001900.1 + 25726 0.7 0.509875
Target:  5'- uGCCGACGACGaucuucUCGCcgACGcGGGCCGcGCc -3'
miRNA:   3'- cCGGUUGCUGU------AGCG--UGU-UCCGGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 46599 0.66 0.761917
Target:  5'- aGGUCAGCccguCGUCGUACGcgucgugguAGGuCCAGUc -3'
miRNA:   3'- -CCGGUUGcu--GUAGCGUGU---------UCC-GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 30482 0.75 0.276339
Target:  5'- cGGCCGGCucACGUCGgGCAccagcGGuGCCAGCg -3'
miRNA:   3'- -CCGGUUGc-UGUAGCgUGU-----UC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 40037 0.74 0.290867
Target:  5'- cGCCGACGAUGUCGguCAcGGCCuccccgAGCu -3'
miRNA:   3'- cCGGUUGCUGUAGCguGUuCCGG------UCG- -5'
7206 5' -54.1 NC_001900.1 + 42078 0.73 0.354057
Target:  5'- gGGCCggUGACGUgGUggagcccgaucacGCAAGaGCCAGUc -3'
miRNA:   3'- -CCGGuuGCUGUAgCG-------------UGUUC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 16982 0.73 0.354916
Target:  5'- aGCCggUGugGUCGCACucGGCauggaCGGCa -3'
miRNA:   3'- cCGGuuGCugUAGCGUGuuCCG-----GUCG- -5'
7206 5' -54.1 NC_001900.1 + 40737 0.73 0.372407
Target:  5'- cGGUCAGCGAUGUCGUcaGCGccGCgAGCg -3'
miRNA:   3'- -CCGGUUGCUGUAGCG--UGUucCGgUCG- -5'
7206 5' -54.1 NC_001900.1 + 41058 0.71 0.447978
Target:  5'- cGGUCGACguucuccuccgaGACGUUGCGgGccAGGCCGGUg -3'
miRNA:   3'- -CCGGUUG------------CUGUAGCGUgU--UCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 23746 0.72 0.399721
Target:  5'- cGGUCGACGGCAUCG-AgAAGGUCgAGUu -3'
miRNA:   3'- -CCGGUUGCUGUAGCgUgUUCCGG-UCG- -5'
7206 5' -54.1 NC_001900.1 + 12251 0.73 0.363589
Target:  5'- gGGCCAgaaGAUccCGCACuGGGUCGGCg -3'
miRNA:   3'- -CCGGUug-CUGuaGCGUGuUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 3533 0.76 0.230042
Target:  5'- cGCCAuCGACGcggCGCuCGGGGCCGGUa -3'
miRNA:   3'- cCGGUuGCUGUa--GCGuGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 30034 0.72 0.409106
Target:  5'- uGCCAGugauCGACAU-GCGCGAGGUCcGCg -3'
miRNA:   3'- cCGGUU----GCUGUAgCGUGUUCCGGuCG- -5'
7206 5' -54.1 NC_001900.1 + 23576 0.76 0.236232
Target:  5'- cGUCAACGACAaCGCGCcuacGGUCGGCa -3'
miRNA:   3'- cCGGUUGCUGUaGCGUGuu--CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 8063 0.73 0.354916
Target:  5'- gGGCCuGACGGCAagGCcaACgAAGGCCAcGCg -3'
miRNA:   3'- -CCGG-UUGCUGUagCG--UG-UUCCGGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 37271 0.72 0.409106
Target:  5'- gGGCCGucguacACGGCc-CGCAgCGGGGCCAGg -3'
miRNA:   3'- -CCGGU------UGCUGuaGCGU-GUUCCGGUCg -5'
7206 5' -54.1 NC_001900.1 + 38108 0.7 0.488813
Target:  5'- uGGCCu-CGGCGUUGCGCGucAGGUCGa- -3'
miRNA:   3'- -CCGGuuGCUGUAGCGUGU--UCCGGUcg -5'
7206 5' -54.1 NC_001900.1 + 22094 0.75 0.254308
Target:  5'- aGGCCAGCGGCAcgacaugaacaaCGCAgCGAGGUgGGCc -3'
miRNA:   3'- -CCGGUUGCUGUa-----------GCGU-GUUCCGgUCG- -5'
7206 5' -54.1 NC_001900.1 + 7141 0.73 0.346391
Target:  5'- cGCCAuCGGCcggAUCGUGaugAAGGCCAGCg -3'
miRNA:   3'- cCGGUuGCUG---UAGCGUg--UUCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.