miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7218 5' -56.8 NC_001900.1 + 15413 1.11 0.000593
Target:  5'- gGCCAACGUCGACCCGGACGCCUACGAg -3'
miRNA:   3'- -CGGUUGCAGCUGGGCCUGCGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 37051 0.78 0.124042
Target:  5'- aGCCGacuucuGCGUC-ACCCGGACGCCgccACGGu -3'
miRNA:   3'- -CGGU------UGCAGcUGGGCCUGCGGa--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 6282 0.75 0.191012
Target:  5'- uCC-ACGUCGGgCUGGACGCCUggcACGAc -3'
miRNA:   3'- cGGuUGCAGCUgGGCCUGCGGA---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 15850 0.75 0.214347
Target:  5'- cGCCAGCGucacggaggcucuggUCGACCUGGGCGUUgaucccgACGAg -3'
miRNA:   3'- -CGGUUGC---------------AGCUGGGCCUGCGGa------UGCU- -5'
7218 5' -56.8 NC_001900.1 + 35098 0.75 0.216024
Target:  5'- uGCCGACGUaccggacugguuggCGACCUGGAaGCgUGCGAu -3'
miRNA:   3'- -CGGUUGCA--------------GCUGGGCCUgCGgAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 25481 0.74 0.229258
Target:  5'- cGCCAGCGUggcucccaCGGCCCGGAgGUCguggaUGCGGa -3'
miRNA:   3'- -CGGUUGCA--------GCUGGGCCUgCGG-----AUGCU- -5'
7218 5' -56.8 NC_001900.1 + 24491 0.73 0.253898
Target:  5'- gGCCAGCGuUCGACCCGG-UGCUgACu- -3'
miRNA:   3'- -CGGUUGC-AGCUGGGCCuGCGGaUGcu -5'
7218 5' -56.8 NC_001900.1 + 3875 0.72 0.302193
Target:  5'- cGUCAACGUCGACuucuacuggaaCCGGA--CCUACGAc -3'
miRNA:   3'- -CGGUUGCAGCUG-----------GGCCUgcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 12869 0.71 0.348981
Target:  5'- -aCGGCGUCGuCCCGGAgagggguucggcUGCCgagGCGAu -3'
miRNA:   3'- cgGUUGCAGCuGGGCCU------------GCGGa--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 16731 0.7 0.391755
Target:  5'- uGUCAACGUCGACaaGGACaCCaaggGCGGc -3'
miRNA:   3'- -CGGUUGCAGCUGggCCUGcGGa---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 5399 0.7 0.419005
Target:  5'- gGCCAcuGCGgaguaCG-CCagcggGGACGCCUACGAc -3'
miRNA:   3'- -CGGU--UGCa----GCuGGg----CCUGCGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 10779 0.69 0.437799
Target:  5'- uGCCGACcUgGGCCgGGACuUCUACGAc -3'
miRNA:   3'- -CGGUUGcAgCUGGgCCUGcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 532 0.69 0.447376
Target:  5'- gGCCAACcucgCGGCCUGGAacaUGCC-GCGAc -3'
miRNA:   3'- -CGGUUGca--GCUGGGCCU---GCGGaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 38151 0.69 0.480774
Target:  5'- cCCAGCGUCguccaggaacugcugGAUCCGGugGCacggGCGGc -3'
miRNA:   3'- cGGUUGCAG---------------CUGGGCCugCGga--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 46596 0.68 0.496907
Target:  5'- gGUCuACGUCGguggcaGCCCGGACGCagcCGGg -3'
miRNA:   3'- -CGGuUGCAGC------UGGGCCUGCGgauGCU- -5'
7218 5' -56.8 NC_001900.1 + 33953 0.68 0.534046
Target:  5'- gGCCGACGcUCGACcagCCGGugGCUccaguccaggucgACGGg -3'
miRNA:   3'- -CGGUUGC-AGCUG---GGCCugCGGa------------UGCU- -5'
7218 5' -56.8 NC_001900.1 + 27135 0.68 0.538236
Target:  5'- cGCCGgauGCGugaUCG-CCCcGACGCCUGCa- -3'
miRNA:   3'- -CGGU---UGC---AGCuGGGcCUGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 48157 0.68 0.542437
Target:  5'- gGCCAGCGcggaaaagcgccuggUCGACCuucgaggagCGGAUGCCcauCGAg -3'
miRNA:   3'- -CGGUUGC---------------AGCUGG---------GCCUGCGGau-GCU- -5'
7218 5' -56.8 NC_001900.1 + 49019 0.67 0.547703
Target:  5'- uCUAGCGUCGGCCCGugcuucuGAuCGgCUugGAa -3'
miRNA:   3'- cGGUUGCAGCUGGGC-------CU-GCgGAugCU- -5'
7218 5' -56.8 NC_001900.1 + 8682 0.67 0.548759
Target:  5'- cGCCAagGCGUacgaggagaugcUGACCCGGcuCGCCgagcACGGg -3'
miRNA:   3'- -CGGU--UGCA------------GCUGGGCCu-GCGGa---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.