miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7218 5' -56.8 NC_001900.1 + 37051 0.78 0.124042
Target:  5'- aGCCGacuucuGCGUC-ACCCGGACGCCgccACGGu -3'
miRNA:   3'- -CGGU------UGCAGcUGGGCCUGCGGa--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 32825 0.67 0.602176
Target:  5'- gGCCAGuCGUCGuugcuggccCCCGGugGCUgucaaGCGu -3'
miRNA:   3'- -CGGUU-GCAGCu--------GGGCCugCGGa----UGCu -5'
7218 5' -56.8 NC_001900.1 + 38151 0.69 0.480774
Target:  5'- cCCAGCGUCguccaggaacugcugGAUCCGGugGCacggGCGGc -3'
miRNA:   3'- cGGUUGCAG---------------CUGGGCCugCGga--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 532 0.69 0.447376
Target:  5'- gGCCAACcucgCGGCCUGGAacaUGCC-GCGAc -3'
miRNA:   3'- -CGGUUGca--GCUGGGCCU---GCGGaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 5399 0.7 0.419005
Target:  5'- gGCCAcuGCGgaguaCG-CCagcggGGACGCCUACGAc -3'
miRNA:   3'- -CGGU--UGCa----GCuGGg----CCUGCGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 16731 0.7 0.391755
Target:  5'- uGUCAACGUCGACaaGGACaCCaaggGCGGc -3'
miRNA:   3'- -CGGUUGCAGCUGggCCUGcGGa---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 1813 0.66 0.663746
Target:  5'- cGCUGAUGUCGAgcgacagcguguucCCCGGAaaGCCgggugACGGc -3'
miRNA:   3'- -CGGUUGCAGCU--------------GGGCCUg-CGGa----UGCU- -5'
7218 5' -56.8 NC_001900.1 + 27045 0.66 0.656198
Target:  5'- aGCCGACacgGUUGguacGCCUGGGCGCUgcUGAu -3'
miRNA:   3'- -CGGUUG---CAGC----UGGGCCUGCGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 15087 0.66 0.623773
Target:  5'- uCCGAccCGUCGACCUGGACuggaGCCacCGGc -3'
miRNA:   3'- cGGUU--GCAGCUGGGCCUG----CGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 13374 0.67 0.580678
Target:  5'- uCCGGCGUCGGaucccagaUCUGGACGCCa---- -3'
miRNA:   3'- cGGUUGCAGCU--------GGGCCUGCGGaugcu -5'
7218 5' -56.8 NC_001900.1 + 10779 0.69 0.437799
Target:  5'- uGCCGACcUgGGCCgGGACuUCUACGAc -3'
miRNA:   3'- -CGGUUGcAgCUGGgCCUGcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 25481 0.74 0.229258
Target:  5'- cGCCAGCGUggcucccaCGGCCCGGAgGUCguggaUGCGGa -3'
miRNA:   3'- -CGGUUGCA--------GCUGGGCCUgCGG-----AUGCU- -5'
7218 5' -56.8 NC_001900.1 + 35771 0.66 0.634587
Target:  5'- cGCCGACGUacuGCuCCaGGuCGuCCUGCGAc -3'
miRNA:   3'- -CGGUUGCAgc-UG-GG-CCuGC-GGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 24491 0.73 0.253898
Target:  5'- gGCCAGCGuUCGACCCGG-UGCUgACu- -3'
miRNA:   3'- -CGGUUGC-AGCUGGGCCuGCGGaUGcu -5'
7218 5' -56.8 NC_001900.1 + 27598 0.67 0.559344
Target:  5'- -aCGACGcgcUCGAuCCCGGAUGCa-GCGAu -3'
miRNA:   3'- cgGUUGC---AGCU-GGGCCUGCGgaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 15291 0.66 0.645399
Target:  5'- gGCCuguACuaCGGCCCGaACGCCUccACGAc -3'
miRNA:   3'- -CGGu--UGcaGCUGGGCcUGCGGA--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 3875 0.72 0.302193
Target:  5'- cGUCAACGUCGACuucuacuggaaCCGGA--CCUACGAc -3'
miRNA:   3'- -CGGUUGCAGCUG-----------GGCCUgcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 11555 0.66 0.623773
Target:  5'- gGCCGGCGaccCGAcCCCGGugGUCacUGAc -3'
miRNA:   3'- -CGGUUGCa--GCU-GGGCCugCGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 27135 0.68 0.538236
Target:  5'- cGCCGgauGCGugaUCG-CCCcGACGCCUGCa- -3'
miRNA:   3'- -CGGU---UGC---AGCuGGGcCUGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 48157 0.68 0.542437
Target:  5'- gGCCAGCGcggaaaagcgccuggUCGACCuucgaggagCGGAUGCCcauCGAg -3'
miRNA:   3'- -CGGUUGC---------------AGCUGG---------GCCUGCGGau-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.