miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7218 5' -56.8 NC_001900.1 + 532 0.69 0.447376
Target:  5'- gGCCAACcucgCGGCCUGGAacaUGCC-GCGAc -3'
miRNA:   3'- -CGGUUGca--GCUGGGCCU---GCGGaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 1813 0.66 0.663746
Target:  5'- cGCUGAUGUCGAgcgacagcguguucCCCGGAaaGCCgggugACGGc -3'
miRNA:   3'- -CGGUUGCAGCU--------------GGGCCUg-CGGa----UGCU- -5'
7218 5' -56.8 NC_001900.1 + 2386 0.67 0.559344
Target:  5'- uGUgGAUGgccaACCUGGACGCCUACa- -3'
miRNA:   3'- -CGgUUGCagc-UGGGCCUGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 3875 0.72 0.302193
Target:  5'- cGUCAACGUCGACuucuacuggaaCCGGA--CCUACGAc -3'
miRNA:   3'- -CGGUUGCAGCUG-----------GGCCUgcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 5399 0.7 0.419005
Target:  5'- gGCCAcuGCGgaguaCG-CCagcggGGACGCCUACGAc -3'
miRNA:   3'- -CGGU--UGCa----GCuGGg----CCUGCGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 6282 0.75 0.191012
Target:  5'- uCC-ACGUCGGgCUGGACGCCUggcACGAc -3'
miRNA:   3'- cGGuUGCAGCUgGGCCUGCGGA---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 7911 0.66 0.656198
Target:  5'- cGCacaaGGCGaUCGACCCGGAgaGCCcggaucCGAa -3'
miRNA:   3'- -CGg---UUGC-AGCUGGGCCUg-CGGau----GCU- -5'
7218 5' -56.8 NC_001900.1 + 8682 0.67 0.548759
Target:  5'- cGCCAagGCGUacgaggagaugcUGACCCGGcuCGCCgagcACGGg -3'
miRNA:   3'- -CGGU--UGCA------------GCUGGGCCu-GCGGa---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 10779 0.69 0.437799
Target:  5'- uGCCGACcUgGGCCgGGACuUCUACGAc -3'
miRNA:   3'- -CGGUUGcAgCUGGgCCUGcGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 11555 0.66 0.623773
Target:  5'- gGCCGGCGaccCGAcCCCGGugGUCacUGAc -3'
miRNA:   3'- -CGGUUGCa--GCU-GGGCCugCGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 12869 0.71 0.348981
Target:  5'- -aCGGCGUCGuCCCGGAgagggguucggcUGCCgagGCGAu -3'
miRNA:   3'- cgGUUGCAGCuGGGCCU------------GCGGa--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 13374 0.67 0.580678
Target:  5'- uCCGGCGUCGGaucccagaUCUGGACGCCa---- -3'
miRNA:   3'- cGGUUGCAGCU--------GGGCCUGCGGaugcu -5'
7218 5' -56.8 NC_001900.1 + 14632 0.66 0.666977
Target:  5'- uCCAACGUCGgugaGCCCaacgaGGuCGUCUGCa- -3'
miRNA:   3'- cGGUUGCAGC----UGGG-----CCuGCGGAUGcu -5'
7218 5' -56.8 NC_001900.1 + 15087 0.66 0.623773
Target:  5'- uCCGAccCGUCGACCUGGACuggaGCCacCGGc -3'
miRNA:   3'- cGGUU--GCAGCUGGGCCUG----CGGauGCU- -5'
7218 5' -56.8 NC_001900.1 + 15291 0.66 0.645399
Target:  5'- gGCCuguACuaCGGCCCGaACGCCUccACGAc -3'
miRNA:   3'- -CGGu--UGcaGCUGGGCcUGCGGA--UGCU- -5'
7218 5' -56.8 NC_001900.1 + 15413 1.11 0.000593
Target:  5'- gGCCAACGUCGACCCGGACGCCUACGAg -3'
miRNA:   3'- -CGGUUGCAGCUGGGCCUGCGGAUGCU- -5'
7218 5' -56.8 NC_001900.1 + 15850 0.75 0.214347
Target:  5'- cGCCAGCGucacggaggcucuggUCGACCUGGGCGUUgaucccgACGAg -3'
miRNA:   3'- -CGGUUGC---------------AGCUGGGCCUGCGGa------UGCU- -5'
7218 5' -56.8 NC_001900.1 + 16731 0.7 0.391755
Target:  5'- uGUCAACGUCGACaaGGACaCCaaggGCGGc -3'
miRNA:   3'- -CGGUUGCAGCUGggCCUGcGGa---UGCU- -5'
7218 5' -56.8 NC_001900.1 + 18766 0.66 0.612967
Target:  5'- gGUCAACG-CGACCgaGGAUGUC-GCGGa -3'
miRNA:   3'- -CGGUUGCaGCUGGg-CCUGCGGaUGCU- -5'
7218 5' -56.8 NC_001900.1 + 19264 0.66 0.656198
Target:  5'- aCCAAgGaCGACCCGGAgcggaaguaUGCCaagACGGu -3'
miRNA:   3'- cGGUUgCaGCUGGGCCU---------GCGGa--UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.