Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7218 | 5' | -56.8 | NC_001900.1 | + | 49019 | 0.67 | 0.547703 |
Target: 5'- uCUAGCGUCGGCCCGugcuucuGAuCGgCUugGAa -3' miRNA: 3'- cGGUUGCAGCUGGGC-------CU-GCgGAugCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 48157 | 0.68 | 0.542437 |
Target: 5'- gGCCAGCGcggaaaagcgccuggUCGACCuucgaggagCGGAUGCCcauCGAg -3' miRNA: 3'- -CGGUUGC---------------AGCUGG---------GCCUGCGGau-GCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 46596 | 0.68 | 0.496907 |
Target: 5'- gGUCuACGUCGguggcaGCCCGGACGCagcCGGg -3' miRNA: 3'- -CGGuUGCAGC------UGGGCCUGCGgauGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 45541 | 0.67 | 0.590336 |
Target: 5'- cGCC-GCGUCGAuggcguCCUGGAUGucaccggccagacCCUGCGGg -3' miRNA: 3'- -CGGuUGCAGCU------GGGCCUGC-------------GGAUGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 44694 | 0.66 | 0.623773 |
Target: 5'- cGCCAGgaGUCGaACCUGGAaccggcgGCUUugGAg -3' miRNA: 3'- -CGGUUg-CAGC-UGGGCCUg------CGGAugCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 40607 | 0.67 | 0.580678 |
Target: 5'- gGCC-GCGUUGACCUGGuugaggaacuuGCGCCgugACu- -3' miRNA: 3'- -CGGuUGCAGCUGGGCC-----------UGCGGa--UGcu -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 39529 | 0.67 | 0.548759 |
Target: 5'- cCCAAgGUCGAUCUGGGgGUCaggGCGGc -3' miRNA: 3'- cGGUUgCAGCUGGGCCUgCGGa--UGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 38151 | 0.69 | 0.480774 |
Target: 5'- cCCAGCGUCguccaggaacugcugGAUCCGGugGCacggGCGGc -3' miRNA: 3'- cGGUUGCAG---------------CUGGGCCugCGga--UGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 37051 | 0.78 | 0.124042 |
Target: 5'- aGCCGacuucuGCGUC-ACCCGGACGCCgccACGGu -3' miRNA: 3'- -CGGU------UGCAGcUGGGCCUGCGGa--UGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 35771 | 0.66 | 0.634587 |
Target: 5'- cGCCGACGUacuGCuCCaGGuCGuCCUGCGAc -3' miRNA: 3'- -CGGUUGCAgc-UG-GG-CCuGC-GGAUGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 35098 | 0.75 | 0.216024 |
Target: 5'- uGCCGACGUaccggacugguuggCGACCUGGAaGCgUGCGAu -3' miRNA: 3'- -CGGUUGCA--------------GCUGGGCCUgCGgAUGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 33953 | 0.68 | 0.534046 |
Target: 5'- gGCCGACGcUCGACcagCCGGugGCUccaguccaggucgACGGg -3' miRNA: 3'- -CGGUUGC-AGCUG---GGCCugCGGa------------UGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 33064 | 0.67 | 0.580678 |
Target: 5'- -aCAGC-UCGGCCCGGAU-CCUGgGAu -3' miRNA: 3'- cgGUUGcAGCUGGGCCUGcGGAUgCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 32825 | 0.67 | 0.602176 |
Target: 5'- gGCCAGuCGUCGuugcuggccCCCGGugGCUgucaaGCGu -3' miRNA: 3'- -CGGUU-GCAGCu--------GGGCCugCGGa----UGCu -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 27598 | 0.67 | 0.559344 |
Target: 5'- -aCGACGcgcUCGAuCCCGGAUGCa-GCGAu -3' miRNA: 3'- cgGUUGC---AGCU-GGGCCUGCGgaUGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 27135 | 0.68 | 0.538236 |
Target: 5'- cGCCGgauGCGugaUCG-CCCcGACGCCUGCa- -3' miRNA: 3'- -CGGU---UGC---AGCuGGGcCUGCGGAUGcu -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 27045 | 0.66 | 0.656198 |
Target: 5'- aGCCGACacgGUUGguacGCCUGGGCGCUgcUGAu -3' miRNA: 3'- -CGGUUG---CAGC----UGGGCCUGCGGauGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 25481 | 0.74 | 0.229258 |
Target: 5'- cGCCAGCGUggcucccaCGGCCCGGAgGUCguggaUGCGGa -3' miRNA: 3'- -CGGUUGCA--------GCUGGGCCUgCGG-----AUGCU- -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 24491 | 0.73 | 0.253898 |
Target: 5'- gGCCAGCGuUCGACCCGG-UGCUgACu- -3' miRNA: 3'- -CGGUUGC-AGCUGGGCCuGCGGaUGcu -5' |
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7218 | 5' | -56.8 | NC_001900.1 | + | 22056 | 0.66 | 0.612967 |
Target: 5'- cGCCAuCGUcgCGACgaGGAUGCCUccgucgauaACGAg -3' miRNA: 3'- -CGGUuGCA--GCUGggCCUGCGGA---------UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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