miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7244 5' -54.4 NC_001900.1 + 2503 1.13 0.000565
Target:  5'- cCCACCAAGCCAUCGCCAACGAGCUGGg -3'
miRNA:   3'- -GGUGGUUCGGUAGCGGUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 3910 0.78 0.173282
Target:  5'- aCAUCGAGU--UCGUCGGCGAGCUGGc -3'
miRNA:   3'- gGUGGUUCGguAGCGGUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 27808 0.77 0.188041
Target:  5'- gCCACCGA-CCG-CGCCGagcacgGCGAGCUGGc -3'
miRNA:   3'- -GGUGGUUcGGUaGCGGU------UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 7286 0.77 0.215099
Target:  5'- gCCACCGcAGCCAUCGCCcuCGccgccGGuCUGGg -3'
miRNA:   3'- -GGUGGU-UCGGUAGCGGuuGC-----UC-GACC- -5'
7244 5' -54.4 NC_001900.1 + 30576 0.76 0.220896
Target:  5'- gCCGCCAGGgCCuUgGCCuucucgauGACGGGCUGGa -3'
miRNA:   3'- -GGUGGUUC-GGuAgCGG--------UUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 9646 0.76 0.220896
Target:  5'- aCCACCGggaguucaaGGCUGcUCGCagcuCAACGAGCUGGg -3'
miRNA:   3'- -GGUGGU---------UCGGU-AGCG----GUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 15307 0.76 0.23289
Target:  5'- aCGCCGAGgaCAUCguggagucaGCCAACGAGCUGa -3'
miRNA:   3'- gGUGGUUCg-GUAG---------CGGUUGCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 40023 0.75 0.251903
Target:  5'- -gGCCucguAGCCGUCGCCGACGAuGUcGGu -3'
miRNA:   3'- ggUGGu---UCGGUAGCGGUUGCU-CGaCC- -5'
7244 5' -54.4 NC_001900.1 + 30273 0.74 0.316612
Target:  5'- uUCAUCAAGCCGgaagcCGCCuucACGAGCgGGu -3'
miRNA:   3'- -GGUGGUUCGGUa----GCGGu--UGCUCGaCC- -5'
7244 5' -54.4 NC_001900.1 + 18063 0.73 0.3663
Target:  5'- aCUGCCucGCCGUCGacaccgaaaCCAcCGGGCUGGa -3'
miRNA:   3'- -GGUGGuuCGGUAGC---------GGUuGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 43101 0.72 0.406009
Target:  5'- gCC-CCAuGCCGUCGCCguucuugaucagcucAugGAGCUGc -3'
miRNA:   3'- -GGuGGUuCGGUAGCGG---------------UugCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 32233 0.72 0.41069
Target:  5'- aCCGCCAcGCCcggugGUUGCCcgugacgaccaucGGCGAGUUGGu -3'
miRNA:   3'- -GGUGGUuCGG-----UAGCGG-------------UUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 44301 0.72 0.421105
Target:  5'- cCCGCCGuAGCCGUaccuguUGCCAgcGCGAGCgcGGc -3'
miRNA:   3'- -GGUGGU-UCGGUA------GCGGU--UGCUCGa-CC- -5'
7244 5' -54.4 NC_001900.1 + 37371 0.71 0.428779
Target:  5'- uCCACCGagacgGGCUcggguaguccaucagGUCGCCGAuguggacgaccucguCGGGCUGGg -3'
miRNA:   3'- -GGUGGU-----UCGG---------------UAGCGGUU---------------GCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 20941 0.71 0.430711
Target:  5'- cUCACCGgguucguccGGCgGUCGUCAACcuGGCUGGa -3'
miRNA:   3'- -GGUGGU---------UCGgUAGCGGUUGc-UCGACC- -5'
7244 5' -54.4 NC_001900.1 + 20878 0.71 0.450299
Target:  5'- aUCGCacaAGGCCAgcUCGCCGagGCGcuGCUGGa -3'
miRNA:   3'- -GGUGg--UUCGGU--AGCGGU--UGCu-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 11748 0.71 0.450299
Target:  5'- aUCACCGAGCUg--GagAACGAGCUGGg -3'
miRNA:   3'- -GGUGGUUCGGuagCggUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 21560 0.71 0.464299
Target:  5'- gCACCAAGacggugcgccgcuaCAUCGCCGACG-GCcGGc -3'
miRNA:   3'- gGUGGUUCg-------------GUAGCGGUUGCuCGaCC- -5'
7244 5' -54.4 NC_001900.1 + 31570 0.7 0.481598
Target:  5'- aCCACCGAGCugaccCAUCGCCugcagaccggacuccAUGAGCcGGu -3'
miRNA:   3'- -GGUGGUUCG-----GUAGCGGu--------------UGCUCGaCC- -5'
7244 5' -54.4 NC_001900.1 + 44237 0.7 0.501294
Target:  5'- aCACCGuaAGUCAUCGCgAccGCGAGCg-- -3'
miRNA:   3'- gGUGGU--UCGGUAGCGgU--UGCUCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.